Wall clock time and date at job start Mon Mar 30 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99789 * 2 1 4 4 C 1.50702 * 109.47206 * 179.97438 * 3 2 1 5 5 C 1.38549 * 119.98480 * 269.97732 * 4 3 2 6 6 C 1.39262 * 119.82470 * 179.97438 * 5 4 3 7 7 C 1.38552 * 119.82837 * 359.74630 * 6 5 4 8 8 C 1.38230 * 120.02875 * 0.53420 * 7 6 5 9 9 C 1.38238 * 119.98386 * 89.99915 * 4 3 2 10 10 C 1.50699 * 119.92835 * 359.97438 * 9 4 3 11 11 C 1.50698 * 109.47196 * 85.02223 * 10 9 4 12 12 H 1.08000 * 120.00005 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99732 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00055 * 359.97438 * 13 11 10 16 16 H 1.48510 * 109.46691 * 90.00287 * 15 13 11 17 17 H 1.48498 * 109.47122 * 209.99865 * 15 13 11 18 18 H 1.48499 * 109.47363 * 330.00352 * 15 13 11 19 19 O 1.36505 * 108.64122 * 180.02562 * 6 5 4 20 20 C 1.43992 * 105.48148 * 342.72138 * 19 6 5 21 21 O 1.36498 * 131.53286 * 0.02562 * 5 4 3 22 22 H 1.08999 * 109.47592 * 300.00226 * 1 2 3 23 23 H 1.09003 * 109.46840 * 60.00395 * 1 2 3 24 24 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47278 * 60.00181 * 3 2 1 26 26 H 1.09001 * 109.47540 * 300.00040 * 3 2 1 27 27 H 1.08001 * 119.98190 * 180.27279 * 7 6 5 28 28 H 1.08002 * 119.93112 * 179.74722 * 8 7 6 29 29 H 1.09008 * 109.46680 * 205.02125 * 10 9 4 30 30 H 1.08997 * 109.47430 * 325.01893 * 10 9 4 31 31 H 0.96995 * 119.99767 * 179.97438 * 14 13 11 32 32 H 1.09007 * 110.57188 * 268.55811 * 20 19 6 33 33 H 1.08999 * 110.57399 * 145.68141 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2023 1.1326 1.2010 6 6 5.5906 1.0222 1.1977 7 6 6.2742 0.9615 -0.0059 8 6 5.5799 1.0217 -1.1996 9 6 4.2017 1.1318 -1.1964 10 6 3.4490 1.1906 -2.5007 11 6 3.2029 2.6296 -2.8743 12 1 3.5558 3.4224 -2.2313 13 6 2.5272 2.9342 -4.0369 14 7 2.3129 4.1901 -4.3631 15 14 1.9175 1.5631 -5.1493 16 1 0.5425 1.1730 -4.7459 17 1 1.9048 2.0363 -6.5568 18 1 2.8201 0.3900 -5.0295 19 8 6.0286 0.9877 2.4901 20 6 4.9341 1.4885 3.2804 21 8 3.7704 1.1670 2.4954 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 7.3504 0.8714 -0.0113 28 1 6.1147 0.9784 -2.1369 29 1 4.0370 0.7079 -3.2815 30 1 2.4949 0.6748 -2.3932 31 1 1.8378 4.4044 -5.1812 32 1 5.0201 2.5669 3.4141 33 1 4.8961 0.9837 4.2456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:08 Heat of formation + Delta-G solvation = -104.547113 kcal Electronic energy + Delta-G solvation = -18437.325705 eV Core-core repulsion = 15428.530436 eV Total energy + Delta-G solvation = -3008.795269 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.11238 -39.81033 -38.29208 -37.21475 -35.21551 -33.19808 -32.20000 -29.35832 -28.13427 -26.68249 -26.30383 -24.79809 -23.07903 -22.11138 -18.97814 -18.78249 -18.47155 -18.31204 -17.34977 -17.09320 -16.54147 -16.23543 -16.01983 -15.39326 -15.17126 -14.90220 -14.37795 -13.98710 -13.87878 -13.76097 -13.51360 -13.47676 -13.01474 -12.51106 -12.42890 -12.38651 -11.93351 -11.76523 -11.57291 -11.32398 -10.76685 -10.64247 -9.68383 -8.90122 -8.27615 -6.32168 0.17737 0.24596 1.38296 1.40422 1.51805 1.81220 2.36882 2.50075 2.56984 3.06141 3.10230 3.53602 3.84598 3.93891 4.08091 4.12459 4.18381 4.31090 4.42980 4.51421 4.52116 4.57044 4.68028 4.79096 4.97715 5.04696 5.13747 5.19681 5.35142 5.47253 5.59711 5.80167 6.15417 6.18753 6.28260 6.73224 7.30996 8.88206 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.007627 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.340939 B = 3670.361731 C = 4354.390306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.110 3.890 4 C -0.092 4.092 5 C 0.037 3.963 6 C -0.002 4.002 7 C -0.084 4.084 8 C -0.119 4.119 9 C -0.031 4.031 10 C 0.024 3.976 11 C -0.512 4.512 12 H 0.033 0.967 13 C 0.016 3.984 14 N -0.945 5.945 15 Si 0.938 3.062 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.244 1.244 19 O -0.318 6.318 20 C 0.203 3.797 21 O -0.323 6.323 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.106 0.894 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -8.104 11.709 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.035 3.965 4 C -0.093 4.093 5 C -0.008 4.008 6 C -0.046 4.046 7 C -0.102 4.102 8 C -0.137 4.137 9 C -0.032 4.032 10 C -0.013 4.013 11 C -0.550 4.550 12 H 0.052 0.948 13 C -0.181 4.181 14 N -0.585 5.585 15 Si 0.762 3.238 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.167 1.167 19 O -0.235 6.235 20 C 0.093 3.907 21 O -0.240 6.240 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.125 0.875 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.182 0.818 28 H 0.173 0.827 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.901 -8.258 11.803 14.694 hybrid contribution -0.731 0.403 -0.411 0.931 sum 2.170 -7.855 11.391 14.006 Atomic orbital electron populations 1.22950 0.79617 1.04031 1.00575 1.87868 1.21413 1.27598 1.95542 1.21149 0.89288 0.85065 1.01046 1.18597 0.95025 1.06393 0.89286 1.19608 0.92151 1.03691 0.85326 1.19832 0.91115 1.07068 0.86561 1.20337 1.01426 1.01297 0.87168 1.21082 0.92758 1.01326 0.98525 1.19920 0.94674 0.94415 0.94168 1.18659 0.95781 0.96072 0.90767 1.21017 1.36142 0.91116 1.06717 0.94828 1.25824 0.95613 0.97692 0.99016 1.70039 1.43005 1.19603 1.25849 0.85831 0.79838 0.80298 0.77880 1.19328 1.20878 1.16734 1.87268 1.39659 1.82591 1.13999 1.26122 0.69646 1.01483 0.93492 1.87303 1.35152 1.87342 1.14209 0.92904 0.94253 0.87530 0.92664 0.91828 0.81763 0.82744 0.94030 0.95195 0.92376 0.88370 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -15.52 10.68 -148.98 -1.59 -17.11 16 3 C 0.11 4.49 5.26 71.24 0.37 4.86 16 4 C -0.09 -3.83 5.52 -19.79 -0.11 -3.94 16 5 C 0.04 1.38 6.81 22.59 0.15 1.54 16 6 C 0.00 -0.06 7.15 22.59 0.16 0.10 16 7 C -0.08 -2.63 10.06 22.34 0.22 -2.41 16 8 C -0.12 -4.23 9.67 22.27 0.22 -4.01 16 9 C -0.03 -1.33 5.07 -19.86 -0.10 -1.43 16 10 C 0.02 1.14 3.49 29.10 0.10 1.24 16 11 C -0.51 -28.49 8.87 25.60 0.23 -28.26 16 12 H 0.03 2.09 7.98 -2.91 -0.02 2.07 16 13 C 0.02 0.92 5.47 84.65 0.46 1.38 16 14 N -0.94 -57.47 13.96 21.45 0.30 -57.17 16 15 Si 0.94 42.74 27.47 68.60 1.88 44.62 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 19 O -0.32 -9.32 11.40 -76.11 -0.87 -10.19 16 20 C 0.20 4.72 8.89 113.37 1.01 5.73 16 21 O -0.32 -10.68 11.39 -76.03 -0.87 -11.54 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 26 H 0.06 2.87 6.15 -2.39 -0.01 2.86 16 27 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.15 4.82 8.06 -2.91 -0.02 4.80 16 29 H 0.04 1.85 7.11 -2.38 -0.02 1.83 16 30 H 0.03 1.41 6.40 -2.39 -0.02 1.39 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -68.81 283.77 3.89 -64.92 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.06 Total: 9.73 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 3.97 Total: -23.26 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.30 Total: -57.17 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -3.32 Total: -38.85 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Total: -68.81 3.89 -64.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.628 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds