Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39871 * 125.42693 * 2 1 4 4 C 1.30525 * 110.03849 * 179.97438 * 3 2 1 5 5 O 1.35930 * 126.14869 * 179.45412 * 4 3 2 6 6 C 1.42895 * 117.00109 * 0.03076 * 5 4 3 7 7 C 1.50703 * 109.47486 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99664 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99641 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00239 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47031 * 89.99549 * 11 9 7 13 13 H 1.48498 * 109.47250 * 209.99579 * 11 9 7 14 14 H 1.48497 * 109.46918 * 330.00028 * 11 9 7 15 15 C 1.46283 * 107.70370 * 359.48123 * 4 3 2 16 16 C 1.39900 * 133.92091 * 179.97438 * 15 4 3 17 17 C 1.36447 * 119.82738 * 179.74252 * 16 15 4 18 18 C 1.38983 * 120.64449 * 0.26361 * 17 16 15 19 19 C 1.37760 * 120.63067 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.15346 * 179.97438 * 19 18 17 21 21 C 1.37115 * 125.42682 * 179.26464 * 2 1 3 22 22 H 1.08997 * 109.47038 * 270.73142 * 1 2 3 23 23 H 1.08999 * 109.47052 * 30.73220 * 1 2 3 24 24 H 1.09001 * 109.46916 * 150.73590 * 1 2 3 25 25 H 1.09001 * 109.47633 * 299.99740 * 6 5 4 26 26 H 1.09000 * 109.47350 * 59.99814 * 6 5 4 27 27 H 0.97008 * 119.99638 * 180.02562 * 10 9 7 28 28 H 1.08002 * 120.08910 * 0.02964 * 16 15 4 29 29 H 1.08003 * 119.67245 * 180.23511 * 17 16 15 30 30 H 1.07999 * 119.68146 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2758 1.1397 0.0000 4 6 3.5342 0.7934 0.0005 5 8 4.5986 1.6388 -0.0097 6 6 4.3146 3.0392 -0.0217 7 6 5.6072 3.8139 -0.0313 8 1 6.5512 3.2892 -0.0289 9 6 5.5847 5.1924 -0.0441 10 7 6.7129 5.8684 -0.0519 11 14 3.9520 6.0999 -0.0488 12 1 3.5225 6.3534 1.3499 13 1 4.1068 7.3936 -0.7612 14 1 2.9287 5.2741 -0.7388 15 6 3.5933 -0.6682 0.0136 16 6 4.6394 -1.5971 0.0193 17 6 4.3609 -2.9327 0.0374 18 6 3.0458 -3.3821 0.0446 19 6 1.9983 -2.4875 0.0332 20 9 0.7235 -2.9350 0.0399 21 6 2.2598 -1.1172 0.0143 22 1 -0.3633 0.0131 1.0276 23 1 -0.3633 0.8833 -0.5252 24 1 -0.3633 -0.8965 -0.5024 25 1 3.7366 3.2853 -0.9125 26 1 3.7410 3.3013 0.8674 27 1 6.6970 6.8383 -0.0605 28 1 5.6648 -1.2579 0.0142 29 1 5.1704 -3.6476 0.0456 30 1 2.8431 -4.4428 0.0585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = 12.104509 kcal Electronic energy + Delta-G solvation = -17480.893919 eV Core-core repulsion = 14385.989490 eV Total energy + Delta-G solvation = -3094.904429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.92084 -41.09963 -37.85076 -36.89504 -33.03249 -32.36971 -30.10736 -29.93908 -28.56971 -25.87640 -23.39936 -22.27861 -22.20497 -20.29181 -18.00148 -17.45657 -16.83666 -16.23211 -16.15702 -15.66545 -15.26026 -15.03486 -14.63119 -14.41832 -14.35919 -13.28403 -13.11287 -12.80214 -12.73135 -12.32420 -11.68305 -11.64509 -11.60527 -11.15527 -11.10369 -10.44010 -10.42983 -10.00396 -9.43613 -9.20425 -8.75576 -8.72543 -7.46671 -6.25487 -4.28177 0.82884 1.36546 2.38541 2.70742 3.19723 3.26251 3.31327 3.55544 3.65253 4.24387 4.25818 4.47434 4.55548 4.80985 5.06005 5.20083 5.21207 5.29181 5.33387 5.45539 5.63992 5.87963 6.03145 6.18703 6.39692 6.49333 6.72142 6.74992 7.01616 7.28833 7.73960 7.94506 8.43318 8.81528 9.30147 10.86353 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.005622 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.016317 B = 4979.431256 C = 5763.992132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.398 5.398 3 N -0.308 5.308 4 C 0.302 3.698 5 O -0.271 6.271 6 C 0.172 3.828 7 C -0.532 4.532 8 H 0.088 0.912 9 C 0.081 3.919 10 N -0.887 5.887 11 Si 0.872 3.128 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.262 1.262 15 C -0.151 4.151 16 C -0.023 4.023 17 C -0.154 4.154 18 C -0.096 4.096 19 C 0.057 3.943 20 F -0.143 7.143 21 C 0.118 3.882 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.270 0.730 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 -17.033 0.052 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.188 5.188 3 N -0.143 5.143 4 C 0.088 3.912 5 O -0.171 6.171 6 C 0.099 3.901 7 C -0.570 4.570 8 H 0.106 0.894 9 C -0.122 4.122 10 N -0.524 5.524 11 Si 0.697 3.303 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.186 1.186 15 C -0.160 4.160 16 C -0.044 4.044 17 C -0.174 4.174 18 C -0.117 4.117 19 C 0.033 3.967 20 F -0.122 7.122 21 C 0.001 3.999 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.037 -15.799 0.037 19.273 hybrid contribution -0.781 0.141 0.042 0.795 sum -11.818 -15.658 0.079 19.617 Atomic orbital electron populations 1.21767 0.73731 1.04194 1.02965 1.47661 1.05484 0.99961 1.65711 1.76987 1.01066 1.07048 1.29224 1.21853 0.86911 0.88834 0.93648 1.86398 1.24194 1.20104 1.86437 1.21052 0.99188 0.73007 0.96865 1.20744 0.92084 0.90977 1.53150 0.89408 1.24646 0.96768 0.96720 0.94089 1.69852 1.25862 1.07637 1.49040 0.86897 0.84236 0.79931 0.79188 1.19601 1.20432 1.18630 1.19044 0.92395 0.90560 1.14013 1.20539 0.98752 0.91634 0.93430 1.20431 0.95653 0.95358 1.05921 1.20944 0.91677 0.99204 0.99875 1.16443 0.79500 0.88086 1.12633 1.91443 1.36373 1.89523 1.94836 1.18676 0.91193 0.88438 1.01619 0.91418 0.89346 0.89695 0.95805 0.96276 0.91989 0.84238 0.84577 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.36 11.20 59.85 0.67 2.03 16 2 N -0.40 -6.69 4.05 -65.42 -0.26 -6.95 16 3 N -0.31 -6.32 11.81 31.79 0.38 -5.94 16 4 C 0.30 6.34 8.14 -14.88 -0.12 6.22 16 5 O -0.27 -6.47 10.20 -19.52 -0.20 -6.67 16 6 C 0.17 4.43 4.45 36.01 0.16 4.59 16 7 C -0.53 -15.47 9.99 -34.44 -0.34 -15.81 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 10 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 11 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 15 C -0.15 -2.63 6.37 -105.11 -0.67 -3.30 16 16 C -0.02 -0.32 10.05 -39.61 -0.40 -0.72 16 17 C -0.15 -1.66 9.97 -39.95 -0.40 -2.06 16 18 C -0.10 -1.04 9.99 -39.48 -0.39 -1.43 16 19 C 0.06 0.76 7.32 -39.28 -0.29 0.47 16 20 F -0.14 -1.79 15.91 2.25 0.04 -1.76 16 21 C 0.12 1.91 6.87 -84.09 -0.58 1.33 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.85 7.02 -51.93 -0.36 0.48 16 25 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -32.24 272.59 -5.13 -37.37 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.84 Total: -4.33 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.46 Total: -6.44 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.88 Total: -38.82 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.20 Total: -6.67 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.24 -5.13 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.474 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds