Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39871 * 125.42693 * 2 1 4 4 C 1.30525 * 110.03849 * 179.97438 * 3 2 1 5 5 O 1.35930 * 126.14869 * 179.45412 * 4 3 2 6 6 C 1.42895 * 117.00109 * 0.03076 * 5 4 3 7 7 C 1.50703 * 109.47486 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99664 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99641 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00239 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47031 * 89.99549 * 11 9 7 13 13 H 1.48498 * 109.47250 * 209.99579 * 11 9 7 14 14 H 1.48497 * 109.46918 * 330.00028 * 11 9 7 15 15 C 1.46283 * 107.70370 * 359.48123 * 4 3 2 16 16 C 1.39900 * 133.92091 * 179.97438 * 15 4 3 17 17 C 1.36447 * 119.82738 * 179.74252 * 16 15 4 18 18 C 1.38983 * 120.64449 * 0.26361 * 17 16 15 19 19 C 1.37760 * 120.63067 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.15346 * 179.97438 * 19 18 17 21 21 C 1.37115 * 125.42682 * 179.26464 * 2 1 3 22 22 H 1.08997 * 109.47038 * 270.73142 * 1 2 3 23 23 H 1.08999 * 109.47052 * 30.73220 * 1 2 3 24 24 H 1.09001 * 109.46916 * 150.73590 * 1 2 3 25 25 H 1.09001 * 109.47633 * 299.99740 * 6 5 4 26 26 H 1.09000 * 109.47350 * 59.99814 * 6 5 4 27 27 H 0.97008 * 119.99638 * 180.02562 * 10 9 7 28 28 H 1.08002 * 120.08910 * 0.02964 * 16 15 4 29 29 H 1.08003 * 119.67245 * 180.23511 * 17 16 15 30 30 H 1.07999 * 119.68146 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2758 1.1397 0.0000 4 6 3.5342 0.7934 0.0005 5 8 4.5986 1.6388 -0.0097 6 6 4.3146 3.0392 -0.0217 7 6 5.6072 3.8139 -0.0313 8 1 6.5512 3.2892 -0.0289 9 6 5.5847 5.1924 -0.0441 10 7 6.7129 5.8684 -0.0519 11 14 3.9520 6.0999 -0.0488 12 1 3.5225 6.3534 1.3499 13 1 4.1068 7.3936 -0.7612 14 1 2.9287 5.2741 -0.7388 15 6 3.5933 -0.6682 0.0136 16 6 4.6394 -1.5971 0.0193 17 6 4.3609 -2.9327 0.0374 18 6 3.0458 -3.3821 0.0446 19 6 1.9983 -2.4875 0.0332 20 9 0.7235 -2.9350 0.0399 21 6 2.2598 -1.1172 0.0143 22 1 -0.3633 0.0131 1.0276 23 1 -0.3633 0.8833 -0.5252 24 1 -0.3633 -0.8965 -0.5024 25 1 3.7366 3.2853 -0.9125 26 1 3.7410 3.3013 0.8674 27 1 6.6970 6.8383 -0.0605 28 1 5.6648 -1.2579 0.0142 29 1 5.1704 -3.6476 0.0456 30 1 2.8431 -4.4428 0.0585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -11.040453 kcal Electronic energy + Delta-G solvation = -17481.897560 eV Core-core repulsion = 14385.989490 eV Total energy + Delta-G solvation = -3095.908070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.90315 -42.36876 -39.49334 -38.05028 -35.10794 -33.76654 -31.14742 -31.11322 -30.60630 -27.04514 -24.97389 -23.84379 -23.35682 -21.72734 -19.52218 -18.81301 -18.61799 -17.44902 -17.39221 -16.93198 -16.61084 -16.51093 -16.19362 -15.72089 -15.47842 -14.98494 -14.46825 -14.16085 -13.98215 -13.66146 -13.28060 -13.16142 -12.65227 -12.60154 -12.59069 -12.06564 -11.93876 -11.89848 -11.60836 -10.97489 -10.52273 -9.89613 -8.67240 -8.48577 -6.59440 -0.27228 0.31198 1.17335 1.27762 1.28878 1.30946 1.41417 2.08322 2.20219 2.58031 2.83310 3.16332 3.33726 3.39951 3.89314 3.98540 4.27516 4.28729 4.33331 4.41449 4.56915 4.62834 4.68263 4.84725 4.96883 5.15936 5.21467 5.42747 5.70936 5.85398 5.94689 6.37178 6.43112 6.58392 7.04205 8.67198 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.005622 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.016317 B = 4979.431256 C = 5763.992132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.401 5.401 3 N -0.335 5.335 4 C 0.267 3.733 5 O -0.291 6.291 6 C 0.190 3.810 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.031 3.969 10 N -0.927 5.927 11 Si 0.944 3.056 12 H -0.258 1.258 13 H -0.263 1.263 14 H -0.255 1.255 15 C -0.177 4.177 16 C -0.043 4.043 17 C -0.128 4.128 18 C -0.075 4.075 19 C 0.052 3.948 20 F -0.137 7.137 21 C 0.104 3.896 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.278 0.722 28 H 0.141 0.859 29 H 0.180 0.820 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -19.398 0.111 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.193 5.193 3 N -0.169 5.169 4 C 0.053 3.947 5 O -0.193 6.193 6 C 0.116 3.884 7 C -0.592 4.592 8 H 0.065 0.935 9 C -0.170 4.170 10 N -0.565 5.565 11 Si 0.765 3.235 12 H -0.182 1.182 13 H -0.188 1.188 14 H -0.179 1.179 15 C -0.186 4.186 16 C -0.063 4.063 17 C -0.148 4.148 18 C -0.096 4.096 19 C 0.029 3.971 20 F -0.116 7.116 21 C -0.013 4.013 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.124 0.876 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.197 0.803 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.000 -18.198 0.098 22.364 hybrid contribution -0.153 0.643 0.026 0.662 sum -13.153 -17.554 0.124 21.936 Atomic orbital electron populations 1.22120 0.71322 1.05566 1.04359 1.47959 1.06612 0.99239 1.65525 1.76766 1.01449 1.09821 1.28864 1.22118 0.86569 0.90051 0.95958 1.86300 1.26178 1.19296 1.87567 1.20607 0.96974 0.74314 0.96514 1.20923 0.92076 0.91971 1.54197 0.93514 1.25580 1.01055 0.97364 0.92992 1.69970 1.28481 1.08488 1.49545 0.85778 0.78944 0.78757 0.80042 1.18215 1.18785 1.17897 1.19248 0.94307 0.89031 1.15989 1.20781 0.98199 0.92724 0.94613 1.20923 0.97076 0.94423 1.02334 1.21499 0.90660 1.00908 0.96503 1.16630 0.80492 0.87113 1.12881 1.91460 1.36103 1.89195 1.94825 1.18990 0.90497 0.89462 1.02351 0.89954 0.88756 0.87567 0.96066 0.96209 0.91240 0.84132 0.80311 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 11.20 127.77 1.43 3.79 16 2 N -0.40 -13.31 4.05 -360.88 -1.46 -14.77 16 3 N -0.33 -14.04 11.81 -166.91 -1.97 -16.01 16 4 C 0.27 11.67 8.14 86.98 0.71 12.37 16 5 O -0.29 -14.73 10.20 -92.77 -0.95 -15.68 16 6 C 0.19 10.16 4.45 71.24 0.32 10.48 16 7 C -0.55 -33.82 9.99 25.60 0.26 -33.56 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 C 0.03 1.80 5.47 84.65 0.46 2.26 16 10 N -0.93 -57.25 13.96 21.45 0.30 -56.95 16 11 Si 0.94 44.07 27.47 68.60 1.88 45.96 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 15 C -0.18 -6.21 6.37 -20.18 -0.13 -6.34 16 16 C -0.04 -1.14 10.05 22.25 0.22 -0.92 16 17 C -0.13 -2.25 9.97 22.03 0.22 -2.03 16 18 C -0.07 -1.26 9.99 22.34 0.22 -1.04 16 19 C 0.05 1.23 7.32 22.46 0.16 1.39 16 20 F -0.14 -2.96 15.91 44.97 0.72 -2.25 16 21 C 0.10 3.23 6.87 39.23 0.27 3.50 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.11 1.88 7.02 -2.39 -0.02 1.86 16 25 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 27 H 0.28 15.69 8.31 -92.70 -0.77 14.91 16 28 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -73.79 272.59 3.78 -70.01 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: 1.11 Total: -0.22 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.15 Total: -10.09 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.13 Total: -87.73 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.95 Total: -15.68 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.72 Total: -2.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -73.79 3.78 -70.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.973 kcal (2) G-P(sol) polarization free energy of solvation -73.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds