Wall clock time and date at job start Mon Mar 30 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 C 1.50703 * 109.47610 * 120.00056 * 2 1 3 5 5 H 1.08001 * 119.99267 * 5.46284 * 4 2 1 6 6 C 1.37875 * 120.00287 * 185.45573 * 4 2 1 7 7 N 1.31520 * 119.99680 * 349.45298 * 6 4 2 8 8 Si 1.86800 * 120.00133 * 169.17514 * 6 4 2 9 9 H 1.48492 * 109.47221 * 89.99970 * 8 6 4 10 10 H 1.48500 * 109.46990 * 210.00209 * 8 6 4 11 11 H 1.48503 * 109.46801 * 329.99944 * 8 6 4 12 12 C 1.50702 * 109.46937 * 240.00523 * 2 1 3 13 13 C 1.38259 * 119.95992 * 245.89530 * 12 2 1 14 14 C 1.38196 * 120.18273 * 179.97438 * 13 12 2 15 15 C 1.38685 * 120.12794 * 0.02562 * 14 13 12 16 16 C 1.39073 * 119.86008 * 359.97438 * 15 14 13 17 17 C 1.38636 * 119.96638 * 65.62001 * 12 2 1 18 18 O 1.35998 * 120.02577 * 0.02562 * 17 12 2 19 19 O 1.36598 * 108.66869 * 179.97438 * 16 15 14 20 20 C 1.43991 * 105.45860 * 17.26979 * 19 16 15 21 21 O 1.36517 * 131.47885 * 179.97438 * 15 14 13 22 22 H 1.08996 * 109.46821 * 304.36210 * 1 2 3 23 23 H 1.08998 * 109.47142 * 64.36756 * 1 2 3 24 24 H 1.08999 * 109.46804 * 184.36683 * 1 2 3 25 25 H 1.08992 * 109.47528 * 186.17073 * 3 2 1 26 26 H 1.08996 * 109.47056 * 306.17294 * 3 2 1 27 27 H 1.09005 * 109.46866 * 66.16657 * 3 2 1 28 28 H 0.96998 * 120.00232 * 1.26145 * 7 6 4 29 29 H 1.07996 * 119.90589 * 0.02562 * 13 12 2 30 30 H 1.07995 * 119.93679 * 179.97438 * 14 13 12 31 31 H 0.96704 * 114.00334 * 90.00186 * 18 17 12 32 32 H 1.08998 * 110.58069 * 91.46618 * 20 19 16 33 33 H 1.09000 * 110.57437 * 214.36000 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.3346 -1.1973 1.8956 6 6 3.3829 -0.7390 1.5069 7 7 4.2478 -0.3328 0.6032 8 14 3.9836 -1.3471 3.1678 9 1 4.2186 -2.8119 3.1032 10 1 5.2511 -0.6574 3.5186 11 1 2.9586 -1.0553 4.2020 12 6 2.0323 -0.7103 -1.2306 13 6 2.7236 -1.9012 -1.1065 14 6 3.1858 -2.5567 -2.2319 15 6 2.9586 -2.0223 -3.4913 16 6 2.2636 -0.8246 -3.6202 17 6 1.7957 -0.1719 -2.4860 18 8 1.1111 0.9970 -2.6072 19 8 2.1723 -0.5126 -4.9469 20 6 2.4613 -1.7358 -5.6496 21 8 3.3036 -2.4633 -4.7364 22 1 -0.3633 0.5800 0.8483 23 1 -0.3633 0.4446 -0.9265 24 1 -0.3633 -1.0247 0.0782 25 1 3.1243 1.4445 -0.1105 26 1 1.5893 1.9872 -0.8295 27 1 1.7696 1.9235 0.9401 28 1 3.9348 0.0039 -0.2509 29 1 2.9022 -2.3207 -0.1275 30 1 3.7258 -3.4865 -2.1304 31 1 1.6719 1.7847 -2.5924 32 1 1.5438 -2.2898 -5.8478 33 1 2.9927 -1.5277 -6.5783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260175716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:11 Heat of formation + Delta-G solvation = -74.783412 kcal Electronic energy + Delta-G solvation = -19227.475098 eV Core-core repulsion = 16219.970480 eV Total energy + Delta-G solvation = -3007.504618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67247 -38.99423 -36.31904 -35.49356 -34.76120 -31.35403 -28.92040 -28.40502 -26.15767 -25.41398 -24.62418 -22.43413 -22.05488 -19.57581 -18.20799 -17.75745 -17.03426 -16.22515 -15.92450 -15.63717 -14.20884 -14.08352 -13.81346 -13.76793 -13.57094 -13.15908 -12.53542 -12.45698 -12.24426 -11.98148 -11.20802 -11.16993 -10.99202 -10.75434 -10.65460 -10.31848 -10.22941 -10.12656 -9.77201 -9.61428 -8.50363 -8.32431 -7.86848 -7.35576 -6.32165 -4.17158 1.81241 1.86876 3.21629 3.37692 3.43031 3.58064 3.84572 4.19150 4.44348 4.73929 4.92423 5.09761 5.22271 5.36240 5.70064 5.83920 5.89932 6.15605 6.32263 6.43959 6.50984 6.55693 6.70502 6.71805 6.89276 6.97646 7.08908 7.23504 7.26674 7.43118 7.54182 7.71679 8.19831 8.21625 8.37155 8.78264 9.52681 10.92497 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.008661 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.493570 B = 3232.077029 C = 3840.870572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.089 3.911 3 C -0.143 4.143 4 C -0.593 4.593 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.900 5.900 8 Si 1.062 2.938 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.288 1.288 12 C -0.055 4.055 13 C -0.049 4.049 14 C -0.120 4.120 15 C 0.018 3.982 16 C -0.018 4.018 17 C 0.112 3.888 18 O -0.485 6.485 19 O -0.311 6.311 20 C 0.213 3.787 21 O -0.316 6.316 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.279 0.721 29 H 0.160 0.840 30 H 0.125 0.875 31 H 0.379 0.621 32 H 0.074 0.926 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -1.296 -7.018 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 C -0.201 4.201 4 C -0.631 4.631 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.536 5.536 8 Si 0.891 3.109 9 H -0.214 1.214 10 H -0.210 1.210 11 H -0.214 1.214 12 C -0.056 4.056 13 C -0.067 4.067 14 C -0.139 4.139 15 C -0.025 4.025 16 C -0.062 4.062 17 C 0.066 3.934 18 O -0.296 6.296 19 O -0.228 6.228 20 C 0.101 3.899 21 O -0.233 6.233 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.143 0.857 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.793 -1.881 -6.350 6.861 hybrid contribution -0.884 0.549 -1.256 1.631 sum -2.678 -1.333 -7.606 8.173 Atomic orbital electron populations 1.21726 0.96373 0.99922 0.99781 1.17283 0.91968 0.91959 0.89922 1.22058 1.01751 0.97051 0.99246 1.21890 0.94758 1.38183 1.08300 0.92688 1.25733 0.93215 0.95856 1.03447 1.70829 1.37311 1.38375 1.07130 0.83632 0.75834 0.76416 0.75034 1.21450 1.20981 1.21420 1.20934 0.95753 0.95635 0.93298 1.21347 0.93637 0.93397 0.98331 1.20228 1.04313 1.01407 0.87934 1.19579 1.01565 0.94797 0.86577 1.20159 1.04266 0.97503 0.84282 1.17511 0.97903 0.89572 0.88397 1.84861 1.35498 1.13952 1.95244 1.87320 1.88214 1.32464 1.14767 1.25430 0.93392 0.78839 0.92285 1.87275 1.58973 1.63024 1.14037 0.93814 0.93668 0.94287 0.92135 0.95103 0.93608 0.90646 0.82240 0.85663 0.76426 0.90881 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.30 37.16 0.31 -2.25 16 2 C 0.09 2.06 0.48 -156.81 -0.08 1.98 16 3 C -0.14 -3.16 7.65 37.16 0.28 -2.88 16 4 C -0.59 -14.99 6.77 -34.44 -0.23 -15.23 16 5 H 0.05 1.41 7.77 -52.49 -0.41 1.00 16 6 C 0.02 0.60 3.82 -17.82 -0.07 0.53 16 7 N -0.90 -24.26 11.91 55.43 0.66 -23.60 16 8 Si 1.06 23.30 29.92 -169.99 -5.09 18.21 16 9 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 12 C -0.05 -1.24 3.41 -104.47 -0.36 -1.60 16 13 C -0.05 -1.10 7.47 -39.59 -0.30 -1.40 16 14 C -0.12 -2.45 10.06 -39.43 -0.40 -2.85 16 15 C 0.02 0.37 7.15 -39.11 -0.28 0.09 16 16 C -0.02 -0.37 7.09 -39.00 -0.28 -0.65 16 17 C 0.11 2.37 6.28 -39.16 -0.25 2.12 16 18 O -0.49 -9.35 10.15 -19.74 -0.20 -9.55 16 19 O -0.31 -5.77 11.41 -46.30 -0.53 -6.30 16 20 C 0.21 3.10 8.89 101.05 0.90 3.99 16 21 O -0.32 -5.70 11.40 -45.75 -0.52 -6.22 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.04 0.92 6.51 -51.93 -0.34 0.58 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.44 5.51 -51.93 -0.29 1.16 16 26 H 0.03 0.59 5.19 -51.93 -0.27 0.32 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.28 7.48 3.94 -40.82 -0.16 7.32 16 29 H 0.16 3.82 5.58 -52.49 -0.29 3.53 16 30 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 31 H 0.38 6.06 7.65 45.56 0.35 6.41 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 264.38 15.07 3.98 3.98 Total: -1.00 -28.88 264.38 -5.17 -34.04 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.74 Total: 7.56 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.74 Total: -18.13 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.66 Total: -23.60 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.25 Total: -22.07 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.09 Total: 18.21 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.88 -5.17 -34.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.740 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds