Wall clock time and date at job start Mon Mar 30 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 C 1.50703 * 109.47610 * 120.00056 * 2 1 3 5 5 H 1.08001 * 119.99267 * 5.46284 * 4 2 1 6 6 C 1.37875 * 120.00287 * 185.45573 * 4 2 1 7 7 N 1.31520 * 119.99680 * 349.45298 * 6 4 2 8 8 Si 1.86800 * 120.00133 * 169.17514 * 6 4 2 9 9 H 1.48492 * 109.47221 * 89.99970 * 8 6 4 10 10 H 1.48500 * 109.46990 * 210.00209 * 8 6 4 11 11 H 1.48503 * 109.46801 * 329.99944 * 8 6 4 12 12 C 1.50702 * 109.46937 * 240.00523 * 2 1 3 13 13 C 1.38259 * 119.95992 * 245.89530 * 12 2 1 14 14 C 1.38196 * 120.18273 * 179.97438 * 13 12 2 15 15 C 1.38685 * 120.12794 * 0.02562 * 14 13 12 16 16 C 1.39073 * 119.86008 * 359.97438 * 15 14 13 17 17 C 1.38636 * 119.96638 * 65.62001 * 12 2 1 18 18 O 1.35998 * 120.02577 * 0.02562 * 17 12 2 19 19 O 1.36598 * 108.66869 * 179.97438 * 16 15 14 20 20 C 1.43991 * 105.45860 * 17.26979 * 19 16 15 21 21 O 1.36517 * 131.47885 * 179.97438 * 15 14 13 22 22 H 1.08996 * 109.46821 * 304.36210 * 1 2 3 23 23 H 1.08998 * 109.47142 * 64.36756 * 1 2 3 24 24 H 1.08999 * 109.46804 * 184.36683 * 1 2 3 25 25 H 1.08992 * 109.47528 * 186.17073 * 3 2 1 26 26 H 1.08996 * 109.47056 * 306.17294 * 3 2 1 27 27 H 1.09005 * 109.46866 * 66.16657 * 3 2 1 28 28 H 0.96998 * 120.00232 * 1.26145 * 7 6 4 29 29 H 1.07996 * 119.90589 * 0.02562 * 13 12 2 30 30 H 1.07995 * 119.93679 * 179.97438 * 14 13 12 31 31 H 0.96704 * 114.00334 * 90.00186 * 18 17 12 32 32 H 1.08998 * 110.58069 * 91.46618 * 20 19 16 33 33 H 1.09000 * 110.57437 * 214.36000 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.3346 -1.1973 1.8956 6 6 3.3829 -0.7390 1.5069 7 7 4.2478 -0.3328 0.6032 8 14 3.9836 -1.3471 3.1678 9 1 4.2186 -2.8119 3.1032 10 1 5.2511 -0.6574 3.5186 11 1 2.9586 -1.0553 4.2020 12 6 2.0323 -0.7103 -1.2306 13 6 2.7236 -1.9012 -1.1065 14 6 3.1858 -2.5567 -2.2319 15 6 2.9586 -2.0223 -3.4913 16 6 2.2636 -0.8246 -3.6202 17 6 1.7957 -0.1719 -2.4860 18 8 1.1111 0.9970 -2.6072 19 8 2.1723 -0.5126 -4.9469 20 6 2.4613 -1.7358 -5.6496 21 8 3.3036 -2.4633 -4.7364 22 1 -0.3633 0.5800 0.8483 23 1 -0.3633 0.4446 -0.9265 24 1 -0.3633 -1.0247 0.0782 25 1 3.1243 1.4445 -0.1105 26 1 1.5893 1.9872 -0.8295 27 1 1.7696 1.9235 0.9401 28 1 3.9348 0.0039 -0.2509 29 1 2.9022 -2.3207 -0.1275 30 1 3.7258 -3.4865 -2.1304 31 1 1.6719 1.7847 -2.5924 32 1 1.5438 -2.2898 -5.8478 33 1 2.9927 -1.5277 -6.5783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260175716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:11 Heat of formation + Delta-G solvation = -93.348246 kcal Electronic energy + Delta-G solvation = -19228.280130 eV Core-core repulsion = 16219.970480 eV Total energy + Delta-G solvation = -3008.309649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.11559 -40.60313 -37.88321 -36.98719 -36.40521 -33.22545 -30.46335 -29.99780 -27.92423 -26.77690 -26.44915 -24.03124 -23.64657 -21.31662 -19.73567 -19.42626 -18.37768 -17.92552 -17.45237 -17.08411 -15.73633 -15.64954 -15.57922 -15.43424 -15.05516 -14.90995 -14.19148 -13.98332 -13.87862 -13.37929 -12.94338 -12.87059 -12.66523 -12.48741 -12.39954 -11.95022 -11.90258 -11.86910 -11.43057 -11.27793 -10.36425 -10.21884 -9.46123 -8.96560 -8.28381 -6.17040 0.20813 0.26274 1.60992 1.66719 1.80686 1.84582 2.55102 2.57648 2.63998 3.19596 3.29584 3.78306 3.87244 4.03240 4.23999 4.27803 4.32635 4.57472 4.63294 4.68517 4.87607 4.95422 5.00030 5.07549 5.16135 5.23420 5.39498 5.54153 5.61159 5.67562 5.89666 6.11558 6.30104 6.40603 6.72598 6.82076 7.58514 8.93964 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.008661 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.493570 B = 3232.077029 C = 3840.870572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.080 3.920 3 C -0.135 4.135 4 C -0.602 4.602 5 H 0.043 0.957 6 C -0.009 4.009 7 N -0.922 5.922 8 Si 1.099 2.901 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.279 1.279 12 C -0.071 4.071 13 C -0.065 4.065 14 C -0.123 4.123 15 C 0.019 3.981 16 C -0.021 4.021 17 C 0.108 3.892 18 O -0.486 6.486 19 O -0.320 6.320 20 C 0.203 3.797 21 O -0.322 6.322 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.273 0.727 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.394 0.606 32 H 0.099 0.901 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -1.460 -8.333 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.192 4.192 4 C -0.639 4.639 5 H 0.062 0.938 6 C -0.211 4.211 7 N -0.560 5.560 8 Si 0.924 3.076 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.204 1.204 12 C -0.072 4.072 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.025 4.025 16 C -0.066 4.066 17 C 0.062 3.938 18 O -0.298 6.298 19 O -0.237 6.237 20 C 0.092 3.908 21 O -0.239 6.239 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.252 0.748 32 H 0.117 0.883 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.092 -2.043 -7.685 8.222 hybrid contribution -0.833 0.595 -0.991 1.425 sum -2.925 -1.448 -8.675 9.269 Atomic orbital electron populations 1.21643 0.95255 0.99772 1.00375 1.17345 0.92967 0.92197 0.89564 1.21944 1.00395 0.96938 0.99953 1.22088 0.94722 1.38129 1.09010 0.93840 1.26646 0.93608 0.95626 1.05207 1.70888 1.37706 1.39915 1.07457 0.83134 0.75330 0.76605 0.72532 1.20256 1.21574 1.20409 1.20832 0.96721 0.95984 0.93677 1.21171 0.94937 0.94101 0.98138 1.20329 1.04094 1.01965 0.87744 1.19627 1.00935 0.94610 0.87294 1.20223 1.03839 0.97390 0.85151 1.17418 0.97924 0.90181 0.88246 1.84807 1.35803 1.14064 1.95133 1.87300 1.88216 1.34486 1.13732 1.26106 0.94896 0.77503 0.92292 1.87264 1.59717 1.63486 1.13389 0.93350 0.92829 0.94804 0.94276 0.92391 0.94324 0.91287 0.84366 0.83770 0.74786 0.88309 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 8.30 71.98 0.60 -4.13 16 2 C 0.08 3.68 0.48 -53.67 -0.03 3.65 16 3 C -0.13 -5.91 7.65 71.98 0.55 -5.36 16 4 C -0.60 -30.73 6.77 25.60 0.17 -30.56 16 5 H 0.04 2.26 7.77 -2.91 -0.02 2.24 16 6 C -0.01 -0.47 3.82 84.65 0.32 -0.15 16 7 N -0.92 -50.34 11.91 21.45 0.26 -50.09 16 8 Si 1.10 47.18 29.92 68.60 2.05 49.23 16 9 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 C -0.07 -3.20 3.41 -19.76 -0.07 -3.27 16 13 C -0.07 -2.96 7.47 22.26 0.17 -2.80 16 14 C -0.12 -4.94 10.06 22.37 0.22 -4.72 16 15 C 0.02 0.76 7.15 22.58 0.16 0.92 16 16 C -0.02 -0.85 7.09 22.65 0.16 -0.69 16 17 C 0.11 4.47 6.28 22.54 0.14 4.62 16 18 O -0.49 -17.92 10.15 -93.53 -0.95 -18.87 16 19 O -0.32 -11.02 11.41 -76.93 -0.88 -11.90 16 20 C 0.20 5.15 8.89 113.37 1.01 6.16 16 21 O -0.32 -10.73 11.40 -76.25 -0.87 -11.60 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 2.11 6.51 -2.39 -0.02 2.10 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.87 5.51 -2.39 -0.01 1.86 16 26 H 0.06 2.15 5.19 -2.39 -0.01 2.14 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.27 14.91 3.94 -92.71 -0.36 14.54 16 29 H 0.14 6.81 5.58 -2.91 -0.02 6.80 16 30 H 0.14 5.08 8.06 -2.91 -0.02 5.05 16 31 H 0.39 11.87 7.65 -74.05 -0.57 11.30 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.17 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -61.06 264.38 4.01 -57.05 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.99 Total: 22.50 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.41 Total: -36.32 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.26 Total: -50.09 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.70 Total: -42.37 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.05 Total: 49.23 kcal Total: -61.06 4.01 -57.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.297 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds