Wall clock time and date at job start Mon Mar 30 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99751 * 2 1 4 4 C 1.50702 * 109.47286 * 270.00091 * 3 2 1 5 5 H 1.07994 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99811 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99910 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47006 * 90.00060 * 8 6 4 10 10 H 1.48502 * 109.47070 * 209.99588 * 8 6 4 11 11 H 1.48495 * 109.47333 * 329.99669 * 8 6 4 12 12 C 1.38996 * 119.99806 * 180.02562 * 2 1 3 13 13 C 1.39141 * 119.90580 * 4.99952 * 12 2 1 14 14 C 1.37750 * 118.59200 * 180.02562 * 13 12 2 15 15 C 1.40170 * 119.55300 * 359.97438 * 14 13 12 16 16 C 1.37185 * 118.93967 * 359.97438 * 15 14 13 17 17 N 1.31708 * 119.89753 * 184.99860 * 12 2 1 18 18 C 1.52445 * 115.54302 * 180.26780 * 16 15 14 19 19 S 1.83406 * 103.44722 * 342.08055 * 18 16 15 20 20 C 1.52274 * 125.26999 * 179.97438 * 15 14 13 21 21 H 1.09003 * 109.47148 * 270.00287 * 1 2 3 22 22 H 1.09006 * 109.46892 * 29.99407 * 1 2 3 23 23 H 1.08994 * 109.47300 * 149.99661 * 1 2 3 24 24 H 1.09005 * 109.47304 * 30.00502 * 3 2 1 25 25 H 1.09003 * 109.46737 * 150.00099 * 3 2 1 26 26 H 0.97003 * 119.99636 * 180.02562 * 7 6 4 27 27 H 1.08008 * 120.70494 * 359.97438 * 13 12 2 28 28 H 1.08001 * 120.22556 * 180.02562 * 14 13 12 29 29 H 1.09002 * 110.61221 * 100.95379 * 18 16 15 30 30 H 1.09005 * 110.61168 * 223.93279 * 18 16 15 31 31 H 1.09004 * 110.62122 * 316.03430 * 20 15 14 32 32 H 1.09005 * 110.62605 * 79.03642 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6730 8 14 3.4375 3.4173 -3.4338 9 1 2.3076 4.2609 -3.8996 10 1 4.6981 4.1997 -3.4967 11 1 3.5538 2.2205 -4.3051 12 6 2.1599 -1.2038 -0.0005 13 6 1.4662 -2.4053 -0.1062 14 6 2.1819 -3.5822 -0.1034 15 6 3.5789 -3.5416 0.0042 16 6 4.2018 -2.3234 0.1041 17 7 3.4733 -1.2037 0.0989 18 6 5.7219 -2.3692 0.2109 19 16 6.0625 -4.1016 0.7074 20 6 4.4952 -4.7576 0.0210 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1384 0.5138 26 1 4.0309 4.4437 -0.8502 27 1 0.3892 -2.4149 -0.1878 28 1 1.6703 -4.5299 -0.1845 29 1 6.1811 -2.1419 -0.7512 30 1 6.0736 -1.6791 0.9778 31 1 4.0889 -5.5356 0.6675 32 1 4.6476 -5.1376 -0.9892 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:16 Heat of formation + Delta-G solvation = 49.643765 kcal Electronic energy + Delta-G solvation = -15839.890229 eV Core-core repulsion = 13312.826801 eV Total energy + Delta-G solvation = -2527.063428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94615 -36.43290 -33.13886 -32.43291 -32.09943 -28.62383 -27.72198 -26.57828 -24.63902 -22.71644 -21.57374 -20.25609 -16.94896 -16.58763 -16.41091 -15.49582 -15.01549 -14.86801 -14.51239 -13.97729 -13.92250 -13.28139 -13.10217 -12.60628 -12.36421 -12.19506 -11.86600 -11.82669 -11.57189 -11.19262 -10.90943 -10.58150 -10.44390 -10.15702 -9.83672 -9.33135 -8.93823 -8.68626 -8.44024 -7.69513 -6.84783 -6.03453 -4.10705 1.56377 1.78491 1.92731 2.26110 3.27314 3.34229 3.38024 3.71989 4.26563 4.40574 4.52413 4.74301 5.16641 5.27294 5.28290 5.37580 5.47897 5.51411 5.59823 5.64115 5.78995 5.91333 6.03560 6.17423 6.31517 6.49878 6.76905 7.08579 7.45648 7.77975 7.91616 8.21652 8.23347 8.78437 8.95760 9.53727 11.01596 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.006600 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.757931 B = 4241.504362 C = 4989.980442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.590 5.590 3 C 0.251 3.749 4 C -0.524 4.524 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.437 3.563 13 C -0.250 4.250 14 C -0.016 4.016 15 C -0.243 4.243 16 C 0.178 3.822 17 N -0.522 5.522 18 C -0.015 4.015 19 S -0.276 6.276 20 C -0.007 4.007 21 H 0.043 0.957 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 -13.820 1.637 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.298 5.298 3 C 0.132 3.868 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.196 3.804 13 C -0.275 4.275 14 C -0.043 4.043 15 C -0.250 4.250 16 C 0.038 3.962 17 N -0.239 5.239 18 C -0.163 4.163 19 S -0.049 6.049 20 C -0.155 4.155 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.999 -13.147 2.341 13.391 hybrid contribution -1.215 0.232 -1.712 2.113 sum -2.214 -12.915 0.628 13.118 Atomic orbital electron populations 1.21610 0.80127 1.02551 1.00360 1.47104 1.04644 1.04514 1.73501 1.19337 0.92637 0.77577 0.97296 1.21446 1.36320 1.06208 0.92339 0.92709 1.24915 0.95439 0.96392 0.97245 1.69936 1.38459 1.14310 1.30621 0.86539 0.77715 0.78583 0.84829 1.20667 1.21057 1.20020 1.18052 0.87485 0.86399 0.88426 1.21366 1.00848 0.92043 1.13278 1.20786 0.91693 0.97841 0.93948 1.20665 0.94715 0.94189 1.15459 1.21206 0.93882 0.87810 0.93275 1.66541 1.06674 1.30008 1.20721 1.22776 0.92738 0.94628 1.06168 1.87653 1.29919 1.08038 1.79323 1.22518 0.92009 0.97682 1.03333 0.93843 0.90593 0.92354 0.95370 0.93102 0.92738 0.84948 0.85634 0.87037 0.86406 0.88078 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.29 59.85 0.62 2.20 16 2 N -0.59 -12.59 2.97 -183.29 -0.54 -13.13 16 3 C 0.25 6.47 5.23 -5.19 -0.03 6.44 16 4 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 5 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.44 8.97 7.38 -155.61 -1.15 7.83 16 13 C -0.25 -4.08 9.27 -39.42 -0.37 -4.45 16 14 C -0.02 -0.23 10.06 -39.03 -0.39 -0.62 16 15 C -0.24 -3.77 5.93 -103.50 -0.61 -4.38 16 16 C 0.18 3.25 6.99 -81.34 -0.57 2.68 16 17 N -0.52 -11.38 9.05 -8.14 -0.07 -11.45 16 18 C -0.01 -0.23 7.40 36.87 0.27 0.04 16 19 S -0.28 -3.86 23.45 -107.50 -2.52 -6.38 16 20 C -0.01 -0.09 7.32 36.79 0.27 0.18 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 23 H 0.06 0.80 6.00 -51.93 -0.31 0.48 16 24 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 25 H 0.05 1.45 7.31 -51.93 -0.38 1.07 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.13 1.80 6.07 -52.48 -0.32 1.48 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -31.09 284.73 -9.44 -40.53 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.93 Total: -1.64 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.38 Total: -3.38 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.12 Total: -50.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.52 Total: -6.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.09 -9.44 -40.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.175 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds