Wall clock time and date at job start Mon Mar 30 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 C 1.50699 * 109.47560 * 239.99615 * 2 1 3 5 5 H 1.08003 * 120.00180 * 239.81825 * 4 2 1 6 6 C 1.37881 * 119.99597 * 59.81378 * 4 2 1 7 7 N 1.31514 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99750 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47224 * 60.00410 * 8 6 4 10 10 H 1.48498 * 109.47293 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47244 * 300.00421 * 8 6 4 12 12 C 1.50707 * 109.47141 * 119.99482 * 2 1 3 13 13 C 1.38256 * 119.95009 * 244.26485 * 12 2 1 14 14 C 1.38660 * 120.08515 * 180.02562 * 13 12 2 15 15 O 1.35975 * 119.98979 * 179.97438 * 14 13 12 16 16 C 1.38703 * 120.02346 * 0.02562 * 14 13 12 17 17 C 1.38481 * 119.98840 * 0.27459 * 16 14 13 18 18 C 1.38485 * 119.95044 * 64.24306 * 12 2 1 19 19 O 1.36603 * 131.46675 * 0.02767 * 18 12 2 20 20 C 1.44363 * 105.35100 * 162.03112 * 19 18 12 21 21 O 1.36502 * 131.47694 * 179.72997 * 17 16 14 22 22 H 1.08996 * 109.47449 * 299.99948 * 1 2 3 23 23 H 1.09001 * 109.47111 * 60.00346 * 1 2 3 24 24 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47292 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46420 * 300.00108 * 3 2 1 27 27 H 1.08992 * 109.47136 * 59.99259 * 3 2 1 28 28 H 0.96993 * 119.99931 * 180.02562 * 7 6 4 29 29 H 1.08003 * 119.95909 * 359.97438 * 13 12 2 30 30 H 0.96698 * 114.00191 * 270.02868 * 15 14 13 31 31 H 1.08003 * 119.99935 * 180.02562 * 16 14 13 32 32 H 1.09001 * 111.04915 * 268.95763 * 20 19 18 33 33 H 1.08997 * 110.39642 * 146.02037 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6558 -1.5868 -1.1312 6 6 1.6962 -0.2417 -2.4827 7 7 0.9374 0.8257 -2.6035 8 14 2.3184 -1.1227 -4.0078 9 1 1.8265 -2.5239 -4.0054 10 1 1.8203 -0.4250 -5.2204 11 1 3.8034 -1.1194 -4.0102 12 6 2.0323 -0.7103 1.2306 13 6 2.7528 -0.0144 2.1835 14 6 3.2168 -0.6653 3.3165 15 8 3.9257 0.0210 4.2522 16 6 2.9591 -2.0164 3.4952 17 6 2.2429 -2.7168 2.5391 18 6 1.7712 -2.0591 1.4054 19 8 1.0960 -2.9577 0.6292 20 6 1.5171 -4.2576 1.0952 21 8 1.8653 -4.0268 2.4722 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.7006 1.1552 -3.4844 29 1 2.9552 1.0374 2.0448 30 1 4.8807 0.0202 4.1008 31 1 3.3203 -2.5229 4.3781 32 1 2.3840 -4.6116 0.5373 33 1 0.6971 -4.9718 1.0207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260181318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:15 Heat of formation + Delta-G solvation = -77.764357 kcal Electronic energy + Delta-G solvation = -18959.052990 eV Core-core repulsion = 15951.419109 eV Total energy + Delta-G solvation = -3007.633881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62029 -38.68612 -36.79125 -35.53811 -34.30674 -31.48002 -29.05298 -28.33483 -25.82281 -25.29367 -25.08191 -22.63406 -22.04370 -19.54338 -17.95868 -17.23370 -17.03618 -16.58020 -15.71002 -15.39547 -14.76296 -14.46814 -13.96705 -13.67478 -13.25646 -12.84349 -12.67957 -12.31569 -12.07249 -11.77844 -11.33837 -11.20528 -10.94211 -10.76836 -10.62919 -10.34597 -10.20603 -10.12323 -9.65210 -9.39298 -8.94280 -8.35111 -7.98903 -7.39034 -5.98122 -4.06681 1.59758 1.76543 3.18497 3.30017 3.34699 3.37453 3.96029 4.08537 4.42741 4.61283 5.01020 5.08462 5.27618 5.29711 5.53073 5.61074 5.86719 6.05925 6.38137 6.52178 6.61423 6.71668 6.74634 6.80754 6.98241 7.05641 7.18877 7.34729 7.59965 7.60072 7.74173 7.94071 8.04016 8.15254 8.40965 8.90310 9.56883 11.03538 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.009140 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.398665 B = 3062.755808 C = 3780.256218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.099 3.901 3 C -0.134 4.134 4 C -0.490 4.490 5 H 0.053 0.947 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.279 1.279 12 C 0.001 3.999 13 C -0.144 4.144 14 C 0.102 3.898 15 O -0.495 6.495 16 C -0.152 4.152 17 C 0.033 3.967 18 C 0.042 3.958 19 O -0.281 6.281 20 C 0.207 3.793 21 O -0.318 6.318 22 H 0.008 0.992 23 H 0.089 0.911 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.014 0.986 28 H 0.260 0.740 29 H 0.143 0.857 30 H 0.385 0.615 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -4.658 7.687 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.098 3.902 3 C -0.192 4.192 4 C -0.528 4.528 5 H 0.072 0.928 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.000 4.000 13 C -0.162 4.162 14 C 0.057 3.943 15 O -0.304 6.304 16 C -0.171 4.171 17 C -0.012 4.012 18 C -0.002 4.002 19 O -0.197 6.197 20 C 0.095 3.905 21 O -0.235 6.235 22 H 0.027 0.973 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.240 0.760 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.991 -4.590 7.757 9.496 hybrid contribution 0.825 -0.917 -1.085 1.643 sum 3.816 -5.507 6.671 9.455 Atomic orbital electron populations 1.21807 0.96497 0.99778 1.00398 1.17261 0.92906 0.92015 0.87978 1.21916 0.98531 0.97952 1.00763 1.20877 1.30938 1.11631 0.89385 0.92849 1.24857 0.95012 0.94987 0.98666 1.69787 1.36638 1.22920 1.23281 0.86655 0.79074 0.79860 0.82386 1.20357 1.21299 1.20422 1.19729 0.93857 0.89462 0.96970 1.21312 1.01337 1.01294 0.92261 1.17868 0.98147 0.88738 0.89518 1.84838 1.22585 1.74069 1.48929 1.19891 1.03914 0.93301 1.00035 1.19533 1.00809 0.83938 0.96878 1.19572 0.97598 0.92661 0.90412 1.87658 1.61689 1.13928 1.56381 1.25591 0.99742 0.87756 0.77421 1.87238 1.82284 1.24705 1.29270 0.97289 0.89255 0.94767 0.95118 0.89303 0.96671 0.92938 0.83906 0.76047 0.85356 0.90559 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.10 37.16 0.30 -2.81 16 2 C 0.10 2.39 0.58 -156.81 -0.09 2.30 16 3 C -0.13 -3.09 6.92 37.16 0.26 -2.83 16 4 C -0.49 -12.96 7.30 -34.44 -0.25 -13.21 16 5 H 0.05 1.44 7.48 -52.48 -0.39 1.05 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.93 9.35 55.43 0.52 -23.41 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.00 0.02 4.73 -104.52 -0.49 -0.48 16 13 C -0.14 -2.74 8.92 -39.42 -0.35 -3.10 16 14 C 0.10 1.73 6.70 -39.25 -0.26 1.46 16 15 O -0.49 -6.99 13.50 -19.66 -0.27 -7.26 16 16 C -0.15 -2.59 10.00 -39.32 -0.39 -2.99 16 17 C 0.03 0.62 7.14 -39.10 -0.28 0.34 16 18 C 0.04 0.89 5.89 -39.10 -0.23 0.66 16 19 O -0.28 -5.90 10.17 -46.03 -0.47 -6.37 16 20 C 0.21 3.28 8.90 101.05 0.90 4.18 16 21 O -0.32 -5.57 11.40 -45.70 -0.52 -6.09 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 24 H 0.03 0.84 7.11 -51.93 -0.37 0.47 16 25 H 0.03 0.67 7.71 -51.93 -0.40 0.27 16 26 H 0.09 2.24 6.08 -51.93 -0.32 1.93 16 27 H 0.01 0.30 7.31 -51.93 -0.38 -0.08 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.14 2.59 5.89 -52.48 -0.31 2.28 16 30 H 0.38 3.44 9.06 45.56 0.41 3.86 16 31 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 273.09 15.07 4.12 4.12 Total: -1.00 -29.75 273.09 -5.52 -35.28 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.89 Total: 2.70 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.99 Total: -14.83 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.52 Total: -23.41 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.25 Total: -19.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.75 -5.52 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.489 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds