Wall clock time and date at job start Mon Mar 30 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 C 1.50699 * 109.47560 * 239.99615 * 2 1 3 5 5 H 1.08003 * 120.00180 * 239.81825 * 4 2 1 6 6 C 1.37881 * 119.99597 * 59.81378 * 4 2 1 7 7 N 1.31514 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99750 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47224 * 60.00410 * 8 6 4 10 10 H 1.48498 * 109.47293 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47244 * 300.00421 * 8 6 4 12 12 C 1.50707 * 109.47141 * 119.99482 * 2 1 3 13 13 C 1.38256 * 119.95009 * 244.26485 * 12 2 1 14 14 C 1.38660 * 120.08515 * 180.02562 * 13 12 2 15 15 O 1.35975 * 119.98979 * 179.97438 * 14 13 12 16 16 C 1.38703 * 120.02346 * 0.02562 * 14 13 12 17 17 C 1.38481 * 119.98840 * 0.27459 * 16 14 13 18 18 C 1.38485 * 119.95044 * 64.24306 * 12 2 1 19 19 O 1.36603 * 131.46675 * 0.02767 * 18 12 2 20 20 C 1.44363 * 105.35100 * 162.03112 * 19 18 12 21 21 O 1.36502 * 131.47694 * 179.72997 * 17 16 14 22 22 H 1.08996 * 109.47449 * 299.99948 * 1 2 3 23 23 H 1.09001 * 109.47111 * 60.00346 * 1 2 3 24 24 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47292 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46420 * 300.00108 * 3 2 1 27 27 H 1.08992 * 109.47136 * 59.99259 * 3 2 1 28 28 H 0.96993 * 119.99931 * 180.02562 * 7 6 4 29 29 H 1.08003 * 119.95909 * 359.97438 * 13 12 2 30 30 H 0.96698 * 114.00191 * 270.02868 * 15 14 13 31 31 H 1.08003 * 119.99935 * 180.02562 * 16 14 13 32 32 H 1.09001 * 111.04915 * 268.95763 * 20 19 18 33 33 H 1.08997 * 110.39642 * 146.02037 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6558 -1.5868 -1.1312 6 6 1.6962 -0.2417 -2.4827 7 7 0.9374 0.8257 -2.6035 8 14 2.3184 -1.1227 -4.0078 9 1 1.8265 -2.5239 -4.0054 10 1 1.8203 -0.4250 -5.2204 11 1 3.8034 -1.1194 -4.0102 12 6 2.0323 -0.7103 1.2306 13 6 2.7528 -0.0144 2.1835 14 6 3.2168 -0.6653 3.3165 15 8 3.9257 0.0210 4.2522 16 6 2.9591 -2.0164 3.4952 17 6 2.2429 -2.7168 2.5391 18 6 1.7712 -2.0591 1.4054 19 8 1.0960 -2.9577 0.6292 20 6 1.5171 -4.2576 1.0952 21 8 1.8653 -4.0268 2.4722 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.7006 1.1552 -3.4844 29 1 2.9552 1.0374 2.0448 30 1 4.8807 0.0202 4.1008 31 1 3.3203 -2.5229 4.3781 32 1 2.3840 -4.6116 0.5373 33 1 0.6971 -4.9718 1.0207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260181318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:15 Heat of formation + Delta-G solvation = -97.810562 kcal Electronic energy + Delta-G solvation = -18959.922259 eV Core-core repulsion = 15951.419109 eV Total energy + Delta-G solvation = -3008.503150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01159 -40.03690 -38.32266 -36.94614 -35.88717 -33.33600 -30.54469 -29.81892 -27.62886 -27.20309 -26.51348 -24.19182 -23.46243 -21.16436 -19.40861 -18.70044 -18.48809 -17.89719 -17.52748 -16.79769 -16.52047 -15.78680 -15.35709 -15.09390 -15.00523 -14.64293 -14.18807 -13.74755 -13.54403 -13.33552 -13.24959 -12.86907 -12.73523 -12.60140 -12.42040 -12.12538 -11.85291 -11.60399 -11.45701 -11.07600 -10.82538 -10.35585 -9.49424 -8.81872 -7.98137 -6.12059 0.18867 0.32736 1.42763 1.43741 1.50371 1.85935 2.45235 2.63931 2.71158 3.25027 3.39472 3.59939 3.90689 4.09911 4.20624 4.25054 4.40130 4.64045 4.80993 4.91104 4.92387 5.09431 5.10682 5.21724 5.33684 5.36530 5.44957 5.57602 5.68594 5.71853 6.10327 6.19704 6.27711 6.45361 6.87915 6.90734 7.52938 9.01185 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.009140 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.398665 B = 3062.755808 C = 3780.256218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.092 3.908 3 C -0.123 4.123 4 C -0.498 4.498 5 H 0.040 0.960 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 C -0.028 4.028 13 C -0.152 4.152 14 C 0.123 3.877 15 O -0.493 6.493 16 C -0.145 4.145 17 C 0.031 3.969 18 C 0.015 3.985 19 O -0.315 6.315 20 C 0.200 3.800 21 O -0.318 6.318 22 H 0.019 0.981 23 H 0.066 0.934 24 H 0.020 0.980 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.149 0.851 30 H 0.412 0.588 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -5.420 9.088 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.091 3.909 3 C -0.181 4.181 4 C -0.537 4.537 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.028 4.028 13 C -0.170 4.170 14 C 0.078 3.922 15 O -0.306 6.306 16 C -0.164 4.164 17 C -0.014 4.014 18 C -0.029 4.029 19 O -0.232 6.232 20 C 0.089 3.911 21 O -0.235 6.235 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.166 0.834 30 H 0.271 0.729 31 H 0.176 0.824 32 H 0.110 0.890 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.191 -5.357 9.164 11.412 hybrid contribution 0.502 -0.710 -1.420 1.665 sum 4.693 -6.067 7.744 10.900 Atomic orbital electron populations 1.21651 0.97391 0.98633 0.99716 1.17207 0.92342 0.92597 0.88709 1.21753 0.98614 0.97365 1.00339 1.21049 1.30627 1.11268 0.90713 0.94181 1.25473 0.95425 0.95708 1.00933 1.69909 1.37313 1.23724 1.23511 0.85845 0.78680 0.78768 0.79696 1.20424 1.20973 1.19991 1.19601 0.96004 0.90161 0.97082 1.21383 1.01297 1.01588 0.92733 1.17749 0.97255 0.88585 0.88649 1.84779 1.24672 1.73465 1.47667 1.20232 1.02603 0.93289 1.00283 1.19724 1.00723 0.84338 0.96599 1.19754 0.98676 0.92843 0.91633 1.87589 1.62445 1.15750 1.57387 1.26063 1.01848 0.86480 0.76710 1.87219 1.82214 1.23935 1.30142 0.96149 0.91488 0.96057 0.94741 0.91846 0.94794 0.93131 0.83391 0.72881 0.82410 0.88989 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.10 71.98 0.58 -5.23 16 2 C 0.09 4.49 0.58 -53.67 -0.03 4.46 16 3 C -0.12 -5.69 6.92 71.98 0.50 -5.19 16 4 C -0.50 -26.77 7.30 25.60 0.19 -26.58 16 5 H 0.04 2.20 7.48 -2.91 -0.02 2.18 16 6 C 0.02 1.25 5.15 84.66 0.44 1.69 16 7 N -0.91 -49.75 9.35 21.45 0.20 -49.55 16 8 Si 0.94 43.17 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C -0.03 -1.20 4.73 -19.80 -0.09 -1.29 16 13 C -0.15 -5.56 8.92 22.37 0.20 -5.36 16 14 C 0.12 3.79 6.70 22.48 0.15 3.94 16 15 O -0.49 -11.94 13.50 -93.27 -1.26 -13.20 16 16 C -0.15 -4.49 10.00 22.44 0.22 -4.27 16 17 C 0.03 1.11 7.14 22.58 0.16 1.27 16 18 C 0.02 0.64 5.89 22.58 0.13 0.77 16 19 O -0.32 -13.26 10.17 -77.27 -0.79 -14.05 16 20 C 0.20 6.04 8.90 113.37 1.01 7.05 16 21 O -0.32 -10.52 11.40 -76.08 -0.87 -11.39 16 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 3.61 6.06 -2.39 -0.01 3.60 16 24 H 0.02 1.06 7.11 -2.39 -0.02 1.04 16 25 H 0.03 1.50 7.71 -2.39 -0.02 1.48 16 26 H 0.06 3.25 6.08 -2.39 -0.01 3.23 16 27 H 0.03 1.38 7.31 -2.39 -0.02 1.37 16 28 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.15 5.13 5.89 -2.91 -0.02 5.11 16 30 H 0.41 5.55 9.06 -74.06 -0.67 4.88 16 31 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.16 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -64.04 273.09 3.25 -60.79 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.48 Total: 10.95 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.46 Total: -28.74 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.20 Total: -49.55 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.91 Total: -38.64 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.04 3.25 -60.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.021 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds