Wall clock time and date at job start Mon Mar 30 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47494 * 2 1 4 4 C 1.50699 * 109.47018 * 239.99695 * 2 1 3 5 5 H 1.08003 * 120.00442 * 245.45911 * 4 2 1 6 6 C 1.37879 * 120.00130 * 65.45968 * 4 2 1 7 7 N 1.31515 * 119.99686 * 9.56576 * 6 4 2 8 8 Si 1.86800 * 120.00348 * 189.55719 * 6 4 2 9 9 H 1.48497 * 109.46796 * 84.99605 * 8 6 4 10 10 H 1.48493 * 109.47411 * 204.99758 * 8 6 4 11 11 H 1.48505 * 109.47102 * 324.99878 * 8 6 4 12 12 N 1.46496 * 109.47175 * 119.99961 * 2 1 3 13 13 C 1.37698 * 120.00164 * 275.00264 * 12 2 1 14 14 N 1.30818 * 124.95540 * 0.04459 * 13 12 2 15 15 C 1.36231 * 108.68937 * 179.97438 * 14 13 12 16 16 C 1.39524 * 133.63785 * 180.02562 * 15 14 13 17 17 C 1.37771 * 119.76542 * 180.02562 * 16 15 14 18 18 C 1.38824 * 120.36152 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.79503 * 180.02562 * 18 17 16 20 20 C 1.38204 * 120.41183 * 0.02562 * 18 17 16 21 21 C 1.38546 * 119.87674 * 359.97438 * 20 18 17 22 22 O 1.34476 * 124.96209 * 179.97438 * 13 12 2 23 23 H 1.09006 * 109.47224 * 63.67037 * 1 2 3 24 24 H 1.09003 * 109.47235 * 183.66900 * 1 2 3 25 25 H 1.08997 * 109.47376 * 303.67218 * 1 2 3 26 26 H 0.96995 * 119.99621 * 179.97438 * 7 6 4 27 27 H 0.97007 * 120.00208 * 94.99770 * 12 2 1 28 28 H 1.08003 * 120.11546 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.81459 * 179.72348 * 17 16 15 30 30 H 1.07998 * 120.06457 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1338 6 6 1.7945 -0.1775 -2.4796 7 7 1.2993 1.0355 -2.5936 8 14 2.1759 -1.1782 -4.0102 9 1 1.0238 -2.0611 -4.3240 10 1 2.4226 -0.2617 -5.1521 11 1 3.3843 -2.0075 -3.7710 12 7 2.0183 -0.6906 1.1961 13 6 2.1498 -0.0037 2.3823 14 7 1.8669 1.2624 2.5505 15 6 2.1174 1.5971 3.8471 16 6 2.0007 2.7813 4.5756 17 6 2.3432 2.8001 5.9100 18 6 2.8028 1.6476 6.5327 19 9 3.1349 1.6788 7.8419 20 6 2.9227 0.4685 5.8217 21 6 2.5820 0.4344 4.4792 22 8 2.5863 -0.5367 3.5371 23 1 -0.3634 0.4558 -0.9211 24 1 -0.3634 -1.0256 0.0658 25 1 -0.3634 0.5698 0.8552 26 1 1.1324 1.4106 -3.4724 27 1 2.2490 -1.6318 1.1526 28 1 1.6440 3.6803 4.0950 29 1 2.2574 3.7174 6.4736 30 1 3.2804 -0.4249 6.3119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:49 Heat of formation + Delta-G solvation = -21.647104 kcal Electronic energy + Delta-G solvation = -17322.662654 eV Core-core repulsion = 14226.294645 eV Total energy + Delta-G solvation = -3096.368009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.90810 -44.12380 -38.91569 -37.89374 -35.42092 -34.44329 -31.88082 -31.21171 -29.18147 -27.30022 -24.78034 -23.72423 -23.29727 -21.97110 -20.12082 -19.10655 -18.17983 -17.94895 -17.82831 -16.95228 -16.76754 -16.50540 -15.88358 -15.56434 -15.08486 -14.53938 -14.23911 -14.13848 -13.85417 -13.41543 -13.26918 -12.92303 -12.70670 -12.54696 -12.41099 -12.26315 -12.07841 -11.30051 -11.14944 -10.66156 -10.44237 -9.91011 -8.59639 -8.22909 -6.36662 -0.26109 0.09689 0.88977 1.46662 1.47798 1.52860 1.57213 2.36632 2.49312 2.55255 3.10020 3.23897 3.49905 3.72170 3.94004 3.99078 4.36695 4.61816 4.72194 4.86230 4.89359 4.97945 5.02464 5.05866 5.22776 5.39806 5.57545 5.60697 5.69164 5.91757 6.06866 6.44208 6.68367 7.10184 7.34067 8.85547 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.057357 B = 0.004440 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.054568 B = 6305.222669 C = 6545.118668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.293 3.707 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.073 0.927 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.653 5.653 13 C 0.506 3.494 14 N -0.576 5.576 15 C 0.038 3.962 16 C -0.065 4.065 17 C -0.120 4.120 18 C 0.095 3.905 19 F -0.130 7.130 20 C -0.112 4.112 21 C -0.015 4.015 22 O -0.243 6.243 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.024 0.976 26 H 0.268 0.732 27 H 0.418 0.582 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 0.046 14.477 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.192 3.808 3 H 0.041 0.959 4 C -0.593 4.593 5 H 0.091 0.909 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.297 5.297 13 C 0.204 3.796 14 N -0.320 5.320 15 C -0.076 4.076 16 C -0.085 4.085 17 C -0.139 4.139 18 C 0.075 3.925 19 F -0.108 7.108 20 C -0.132 4.132 21 C -0.066 4.066 22 O -0.135 6.135 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.256 0.744 28 H 0.175 0.825 29 H 0.199 0.801 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.439 0.652 13.790 13.880 hybrid contribution 0.495 -1.323 -0.421 1.474 sum 1.935 -0.670 13.370 13.525 Atomic orbital electron populations 1.21903 0.97798 0.99548 0.99778 1.18603 0.91065 0.92610 0.78495 0.95869 1.21434 1.37970 1.09323 0.90586 0.90878 1.25685 0.94569 0.95454 1.01971 1.70100 1.44408 1.15152 1.25229 0.85403 0.78919 0.78321 0.77982 1.19533 1.21177 1.19057 1.44429 1.69056 1.13085 1.03100 1.22022 0.89216 0.86153 0.82237 1.71213 1.33770 1.09858 1.17122 1.20338 1.01254 0.96339 0.89625 1.20309 0.99839 0.95590 0.92748 1.21238 0.99874 0.98818 0.93981 1.16950 1.03048 0.93896 0.78645 1.91521 1.90398 1.97039 1.31857 1.19630 1.04942 1.00066 0.88542 1.19749 1.07921 0.87249 0.91698 1.84364 1.72681 1.38417 1.18077 0.92480 0.93601 0.95702 0.92292 0.74447 0.82531 0.80086 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 9.37 71.98 0.67 -5.49 16 2 C 0.29 14.40 2.55 44.24 0.11 14.51 16 3 H 0.02 1.34 7.69 -2.39 -0.02 1.32 16 4 C -0.56 -28.25 8.66 25.60 0.22 -28.03 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 1.28 5.17 84.66 0.44 1.72 16 7 N -0.91 -50.40 12.16 21.45 0.26 -50.14 16 8 Si 0.97 40.64 29.55 68.60 2.03 42.67 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.65 -27.29 5.19 -444.96 -2.31 -29.59 16 13 C 0.51 21.04 8.93 179.30 1.60 22.64 16 14 N -0.58 -24.98 10.67 -306.48 -3.27 -28.25 16 15 C 0.04 1.35 7.23 39.26 0.28 1.63 16 16 C -0.06 -1.74 10.09 22.47 0.23 -1.51 16 17 C -0.12 -2.48 10.00 22.30 0.22 -2.25 16 18 C 0.10 2.16 7.29 22.40 0.16 2.32 16 19 F -0.13 -2.74 17.26 44.97 0.78 -1.96 16 20 C -0.11 -2.89 10.03 22.34 0.22 -2.67 16 21 C -0.02 -0.51 7.42 22.84 0.17 -0.34 16 22 O -0.24 -9.00 10.79 -14.33 -0.15 -9.15 16 23 H 0.06 2.91 6.83 -2.38 -0.02 2.89 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.42 15.15 8.65 -92.70 -0.80 14.35 16 28 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -59.89 273.35 2.05 -57.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.38 Total: 16.05 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.34 Total: 2.53 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -5.32 Total: -107.98 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.15 Total: -9.15 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -59.89 2.05 -57.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.194 kcal (2) G-P(sol) polarization free energy of solvation -59.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds