Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00287 * 2 1 4 4 H 1.09006 * 109.47364 * 334.54790 * 3 2 1 5 5 C 1.50697 * 109.47461 * 214.54111 * 3 2 1 6 6 H 1.07999 * 120.00659 * 245.33762 * 5 3 2 7 7 C 1.37885 * 119.99591 * 65.34260 * 5 3 2 8 8 N 1.31512 * 119.99744 * 355.04041 * 7 5 3 9 9 Si 1.86792 * 120.00041 * 175.04914 * 7 5 3 10 10 H 1.48503 * 109.47314 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47393 * 119.99332 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99653 * 9 7 5 13 13 C 1.50708 * 109.46880 * 94.54278 * 3 2 1 14 14 C 1.38258 * 119.94126 * 40.00390 * 13 3 2 15 15 C 1.38189 * 120.11147 * 180.02562 * 14 13 3 16 16 C 1.38705 * 120.07040 * 0.02562 * 15 14 13 17 17 C 1.38969 * 119.81507 * 359.87466 * 16 15 14 18 18 C 1.38196 * 119.94390 * 219.72189 * 13 3 2 19 19 O 1.36110 * 120.78002 * 180.36886 * 17 16 15 20 20 C 1.43170 * 116.69018 * 342.52004 * 19 17 16 21 21 C 1.53469 * 108.23763 * 46.31128 * 20 19 17 22 22 O 1.36104 * 119.40189 * 179.64667 * 16 15 14 23 23 H 1.09002 * 109.47186 * 295.03722 * 1 2 3 24 24 H 1.08993 * 109.47622 * 175.02429 * 1 2 3 25 25 H 1.09005 * 109.46984 * 55.02759 * 1 2 3 26 26 H 0.97007 * 120.00075 * 179.97438 * 8 7 5 27 27 H 1.07992 * 119.94211 * 0.03825 * 14 13 3 28 28 H 1.08001 * 119.96512 * 180.02562 * 15 14 13 29 29 H 1.08002 * 119.96862 * 359.97438 * 18 13 3 30 30 H 1.09001 * 109.71097 * 165.99199 * 20 19 17 31 31 H 1.09000 * 109.71517 * 286.61717 * 20 19 17 32 32 H 1.08996 * 109.70907 * 59.98124 * 21 20 19 33 33 H 1.09005 * 109.71227 * 180.60853 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3104 2.0148 -0.4417 5 6 3.2838 1.2883 -0.8056 6 1 4.2322 1.4658 -0.3204 7 6 3.2381 1.0460 -2.1622 8 7 2.0968 0.7338 -2.7363 9 14 4.7972 1.1611 -3.1845 10 1 5.9385 1.5261 -2.3074 11 1 5.0658 -0.1504 -3.8270 12 1 4.6266 2.1998 -4.2321 13 6 2.3174 1.7184 1.4164 14 6 2.8296 0.7950 2.3089 15 6 3.1120 1.1698 3.6087 16 6 2.8818 2.4738 4.0216 17 6 2.3689 3.4025 3.1239 18 6 2.0922 3.0210 1.8194 19 8 2.1425 4.6891 3.5060 20 6 2.0817 4.9405 4.9141 21 6 3.2659 4.2276 5.5809 22 8 3.1580 2.8264 5.3068 23 1 -0.3634 0.4349 0.9311 24 1 -0.3634 -1.0237 -0.0891 25 1 -0.3633 0.5891 -0.8421 26 1 2.0646 0.5637 -3.6908 27 1 3.0094 -0.2209 1.9896 28 1 3.5124 0.4466 4.3038 29 1 1.6967 3.7417 1.1189 30 1 2.1467 6.0127 5.0992 31 1 1.1455 4.5536 5.3166 32 1 4.2018 4.6105 5.1742 33 1 3.2367 4.3946 6.6576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -92.274809 kcal Electronic energy + Delta-G solvation = -18307.312775 eV Core-core repulsion = 15299.049674 eV Total energy + Delta-G solvation = -3008.263102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85508 -37.84724 -36.92766 -35.80704 -32.56922 -31.09184 -30.33067 -28.68382 -26.68731 -25.03971 -24.48172 -22.58492 -21.85238 -19.86081 -18.23439 -16.88397 -16.85080 -16.57685 -15.15050 -15.03076 -14.67954 -14.57910 -14.16444 -14.13571 -13.54457 -13.36686 -13.27255 -12.89116 -12.53731 -11.92354 -11.49935 -11.29767 -10.98840 -10.90491 -10.74366 -10.52777 -10.20272 -10.03367 -9.84991 -9.27988 -8.61367 -8.11358 -8.01902 -7.43822 -6.09542 -4.20734 1.89610 1.92055 3.27678 3.31155 3.36179 3.41215 3.48088 4.29048 4.37042 4.42939 4.84733 4.92861 5.04013 5.06556 5.26923 5.46980 5.68986 5.76995 5.85091 6.02232 6.17734 6.36925 6.39501 6.56946 6.66425 6.71936 6.82231 7.05097 7.27450 7.27877 7.45288 7.83807 7.83980 8.15539 8.79476 8.98253 9.49170 10.97916 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.006226 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.417822 B = 4495.955863 C = 4831.763101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.371 6.371 3 C 0.250 3.750 4 H 0.032 0.968 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.076 3.924 8 N -0.865 5.865 9 Si 0.897 3.103 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 C -0.059 4.059 14 C -0.092 4.092 15 C -0.120 4.120 16 C 0.023 3.977 17 C 0.041 3.959 18 C -0.113 4.113 19 O -0.311 6.311 20 C 0.022 3.978 21 C 0.022 3.978 22 O -0.314 6.314 23 H 0.010 0.990 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 5.652 12.966 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.194 3.806 4 H 0.049 0.951 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.129 4.129 8 N -0.502 5.502 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.059 4.059 14 C -0.110 4.110 15 C -0.139 4.139 16 C -0.021 4.021 17 C -0.003 4.003 18 C -0.132 4.132 19 O -0.226 6.226 20 C -0.054 4.054 21 C -0.054 4.054 22 O -0.229 6.229 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.753 5.484 12.841 13.983 hybrid contribution 0.577 0.480 -0.377 0.840 sum -0.176 5.964 12.464 13.819 Atomic orbital electron populations 1.22416 0.85408 1.00102 0.97679 1.88130 1.15963 1.30795 1.94049 1.18756 0.94354 0.82668 0.84855 0.95062 1.21070 0.92241 1.50185 0.91996 0.91657 1.25056 0.96365 0.93597 0.97904 1.70017 1.25122 1.44088 1.10973 0.86456 0.83276 0.77749 0.80062 1.19490 1.20784 1.20826 1.20978 0.94706 0.91606 0.98643 1.20858 0.98286 1.00762 0.91114 1.20402 1.03496 0.93272 0.96721 1.18749 1.04152 0.95039 0.84121 1.18834 1.02857 0.83682 0.94932 1.20351 1.03284 0.96809 0.92758 1.86292 1.88503 1.24399 1.23402 1.23509 0.98709 1.02197 0.81003 1.23505 0.98711 0.81066 1.02114 1.86245 1.87753 1.24073 1.24842 0.97104 0.92365 0.94607 0.92826 0.84687 0.85676 0.85286 0.86752 0.91029 0.90965 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.88 101.05 1.10 1.99 16 2 O -0.37 -9.48 9.23 -35.23 -0.33 -9.81 16 3 C 0.25 6.37 2.13 -29.03 -0.06 6.30 16 4 H 0.03 0.85 7.52 -51.93 -0.39 0.46 16 5 C -0.52 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.07 1.80 7.75 -52.49 -0.41 1.40 16 7 C 0.08 2.11 5.43 -17.82 -0.10 2.02 16 8 N -0.87 -24.69 12.97 55.43 0.72 -23.97 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.06 -1.31 4.91 -104.63 -0.51 -1.82 16 14 C -0.09 -1.89 9.34 -39.59 -0.37 -2.26 16 15 C -0.12 -2.20 9.96 -39.43 -0.39 -2.59 16 16 C 0.02 0.43 6.49 -39.14 -0.25 0.17 16 17 C 0.04 0.78 6.49 -39.14 -0.25 0.52 16 18 C -0.11 -2.35 9.58 -39.42 -0.38 -2.72 16 19 O -0.31 -5.19 10.42 -32.88 -0.34 -5.54 16 20 C 0.02 0.25 7.26 37.40 0.27 0.52 16 21 C 0.02 0.25 7.26 37.40 0.27 0.52 16 22 O -0.31 -4.98 10.42 -32.86 -0.34 -5.32 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.14 2.78 7.77 -52.49 -0.41 2.37 16 28 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.13 2.59 8.04 -52.49 -0.42 2.17 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 286.66 15.07 4.32 4.32 Total: -1.00 -31.09 286.66 -6.11 -37.20 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.14 Total: -1.05 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.98 Total: -11.97 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.72 Total: -23.97 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.01 Total: -20.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.09 -6.11 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.074 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds