Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00287 * 2 1 4 4 H 1.09006 * 109.47364 * 334.54790 * 3 2 1 5 5 C 1.50697 * 109.47461 * 214.54111 * 3 2 1 6 6 H 1.07999 * 120.00659 * 245.33762 * 5 3 2 7 7 C 1.37885 * 119.99591 * 65.34260 * 5 3 2 8 8 N 1.31512 * 119.99744 * 355.04041 * 7 5 3 9 9 Si 1.86792 * 120.00041 * 175.04914 * 7 5 3 10 10 H 1.48503 * 109.47314 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47393 * 119.99332 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99653 * 9 7 5 13 13 C 1.50708 * 109.46880 * 94.54278 * 3 2 1 14 14 C 1.38258 * 119.94126 * 40.00390 * 13 3 2 15 15 C 1.38189 * 120.11147 * 180.02562 * 14 13 3 16 16 C 1.38705 * 120.07040 * 0.02562 * 15 14 13 17 17 C 1.38969 * 119.81507 * 359.87466 * 16 15 14 18 18 C 1.38196 * 119.94390 * 219.72189 * 13 3 2 19 19 O 1.36110 * 120.78002 * 180.36886 * 17 16 15 20 20 C 1.43170 * 116.69018 * 342.52004 * 19 17 16 21 21 C 1.53469 * 108.23763 * 46.31128 * 20 19 17 22 22 O 1.36104 * 119.40189 * 179.64667 * 16 15 14 23 23 H 1.09002 * 109.47186 * 295.03722 * 1 2 3 24 24 H 1.08993 * 109.47622 * 175.02429 * 1 2 3 25 25 H 1.09005 * 109.46984 * 55.02759 * 1 2 3 26 26 H 0.97007 * 120.00075 * 179.97438 * 8 7 5 27 27 H 1.07992 * 119.94211 * 0.03825 * 14 13 3 28 28 H 1.08001 * 119.96512 * 180.02562 * 15 14 13 29 29 H 1.08002 * 119.96862 * 359.97438 * 18 13 3 30 30 H 1.09001 * 109.71097 * 165.99199 * 20 19 17 31 31 H 1.09000 * 109.71517 * 286.61717 * 20 19 17 32 32 H 1.08996 * 109.70907 * 59.98124 * 21 20 19 33 33 H 1.09005 * 109.71227 * 180.60853 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3104 2.0148 -0.4417 5 6 3.2838 1.2883 -0.8056 6 1 4.2322 1.4658 -0.3204 7 6 3.2381 1.0460 -2.1622 8 7 2.0968 0.7338 -2.7363 9 14 4.7972 1.1611 -3.1845 10 1 5.9385 1.5261 -2.3074 11 1 5.0658 -0.1504 -3.8270 12 1 4.6266 2.1998 -4.2321 13 6 2.3174 1.7184 1.4164 14 6 2.8296 0.7950 2.3089 15 6 3.1120 1.1698 3.6087 16 6 2.8818 2.4738 4.0216 17 6 2.3689 3.4025 3.1239 18 6 2.0922 3.0210 1.8194 19 8 2.1425 4.6891 3.5060 20 6 2.0817 4.9405 4.9141 21 6 3.2659 4.2276 5.5809 22 8 3.1580 2.8264 5.3068 23 1 -0.3634 0.4349 0.9311 24 1 -0.3634 -1.0237 -0.0891 25 1 -0.3633 0.5891 -0.8421 26 1 2.0646 0.5637 -3.6908 27 1 3.0094 -0.2209 1.9896 28 1 3.5124 0.4466 4.3038 29 1 1.6967 3.7417 1.1189 30 1 2.1467 6.0127 5.0992 31 1 1.1455 4.5536 5.3166 32 1 4.2018 4.6105 5.1742 33 1 3.2367 4.3946 6.6576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -112.434753 kcal Electronic energy + Delta-G solvation = -18308.186976 eV Core-core repulsion = 15299.049674 eV Total energy + Delta-G solvation = -3009.137302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13955 -39.46059 -38.17083 -37.53619 -34.63507 -32.50026 -31.75587 -30.12860 -28.38373 -26.87849 -25.86288 -24.21757 -23.37685 -21.25187 -19.52358 -18.76996 -18.16668 -18.11312 -16.83531 -16.46299 -16.24425 -16.09279 -15.77628 -15.42046 -15.30442 -14.76980 -14.69422 -14.45300 -13.96402 -13.59935 -13.33187 -12.85109 -12.69497 -12.52644 -12.13132 -11.94452 -11.83603 -11.82082 -11.37669 -11.27096 -10.68495 -10.00471 -9.53503 -8.92629 -8.17391 -6.37369 0.37236 0.41301 1.41595 1.43102 1.55877 2.10615 2.32531 2.40829 2.79603 3.03370 3.36965 3.73358 3.82488 3.99691 4.08949 4.22293 4.34718 4.43690 4.50100 4.61710 4.64762 4.72004 4.76602 4.95154 4.96142 5.06401 5.18866 5.30556 5.69278 5.73641 5.83445 5.96494 6.11955 6.49342 6.69468 7.05248 7.36381 8.89247 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.006226 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.417822 B = 4495.955863 C = 4831.763101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.394 6.394 3 C 0.255 3.745 4 H 0.003 0.997 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.897 5.897 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.274 1.274 13 C -0.081 4.081 14 C -0.102 4.102 15 C -0.114 4.114 16 C 0.031 3.969 17 C 0.045 3.955 18 C -0.129 4.129 19 O -0.326 6.326 20 C 0.012 3.988 21 C 0.014 3.986 22 O -0.319 6.319 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 6.492 15.108 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.313 6.313 3 C 0.199 3.801 4 H 0.021 0.979 5 C -0.576 4.576 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.534 5.534 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.199 1.199 13 C -0.082 4.082 14 C -0.120 4.120 15 C -0.133 4.133 16 C -0.014 4.014 17 C 0.000 4.000 18 C -0.148 4.148 19 O -0.242 6.242 20 C -0.062 4.062 21 C -0.060 4.060 22 O -0.235 6.235 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.171 0.829 29 H 0.140 0.860 30 H 0.173 0.827 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.090 6.341 15.007 16.292 hybrid contribution 0.261 0.333 -0.855 0.954 sum 0.350 6.674 14.152 15.651 Atomic orbital electron populations 1.22510 0.83526 1.01471 0.97919 1.88027 1.18072 1.30809 1.94355 1.18484 0.92933 0.81927 0.86737 0.97926 1.21357 0.92871 1.50506 0.92914 0.92436 1.25873 0.99534 0.93119 0.98971 1.70119 1.27019 1.44926 1.11342 0.85435 0.79411 0.77959 0.78395 1.19134 1.20242 1.19936 1.20663 0.97205 0.92876 0.97447 1.20785 0.99035 1.00114 0.92067 1.20600 1.02485 0.94120 0.96054 1.18805 1.02817 0.94705 0.85038 1.18758 1.02084 0.84887 0.94256 1.20296 1.04279 0.96219 0.93989 1.86268 1.88169 1.22880 1.26869 1.23994 0.99214 1.04878 0.78137 1.23957 0.98655 0.78516 1.04894 1.86242 1.87245 1.27051 1.22921 0.95322 0.90012 0.96185 0.92600 0.85454 0.82895 0.85988 0.82710 0.90245 0.90616 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.88 10.88 113.37 1.23 3.11 16 2 O -0.39 -20.79 9.23 -148.98 -1.38 -22.17 16 3 C 0.26 13.60 2.13 29.10 0.06 13.66 16 4 H 0.00 0.17 7.52 -2.38 -0.02 0.16 16 5 C -0.54 -30.89 8.73 25.60 0.22 -30.66 16 6 H 0.06 3.28 7.75 -2.91 -0.02 3.26 16 7 C 0.03 1.56 5.43 84.66 0.46 2.02 16 8 N -0.90 -52.53 12.97 21.45 0.28 -52.25 16 9 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 C -0.08 -3.74 4.91 -19.87 -0.10 -3.84 16 14 C -0.10 -4.22 9.34 22.26 0.21 -4.01 16 15 C -0.11 -4.02 9.96 22.37 0.22 -3.80 16 16 C 0.03 1.08 6.49 22.56 0.15 1.22 16 17 C 0.04 1.67 6.49 22.56 0.15 1.81 16 18 C -0.13 -5.48 9.58 22.37 0.21 -5.27 16 19 O -0.33 -10.31 10.42 -82.57 -0.86 -11.17 16 20 C 0.01 0.24 7.26 72.14 0.52 0.76 16 21 C 0.01 0.27 7.26 72.14 0.52 0.79 16 22 O -0.32 -9.05 10.42 -82.50 -0.86 -9.91 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 24 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 25 H 0.02 0.91 7.98 -2.38 -0.02 0.90 16 26 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 27 H 0.13 5.37 7.77 -2.91 -0.02 5.34 16 28 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.12 5.17 8.04 -2.91 -0.02 5.14 16 30 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.16 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -68.68 286.66 4.18 -64.50 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.10 Total: 9.10 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.87 Total: -24.19 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.28 Total: -52.25 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -3.10 Total: -43.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.68 4.18 -64.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.933 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds