Wall clock time and date at job start Mon Mar 30 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38703 * 119.98487 * 359.72923 * 3 2 1 5 5 C 1.38221 * 120.07706 * 179.69565 * 4 3 2 6 6 C 1.38528 * 120.10382 * 0.61577 * 5 4 3 7 7 C 1.39260 * 119.91353 * 359.65110 * 6 5 4 8 8 C 1.38524 * 119.88534 * 0.04390 * 7 6 5 9 9 C 1.50703 * 120.00902 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46883 * 270.02030 * 9 8 7 11 11 C 1.50697 * 109.47197 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00040 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00385 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47026 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46851 * 120.00208 * 15 13 11 18 18 H 1.48498 * 109.46948 * 240.00550 * 15 13 11 19 19 O 1.36513 * 108.64507 * 180.02562 * 7 6 5 20 20 C 1.43986 * 105.50117 * 17.28041 * 19 7 6 21 21 O 1.36604 * 131.46736 * 179.65147 * 6 5 4 22 22 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.95901 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.94609 * 180.27991 * 5 4 3 27 27 H 1.08997 * 109.46699 * 30.01469 * 9 8 7 28 28 H 1.08994 * 109.47529 * 150.01956 * 9 8 7 29 29 H 1.09003 * 109.47213 * 299.99643 * 10 9 8 30 30 H 1.09008 * 109.47164 * 59.99532 * 10 9 8 31 31 H 0.96994 * 120.00024 * 179.97438 * 14 13 11 32 32 H 1.09005 * 110.56504 * 91.42338 * 20 19 7 33 33 H 1.08991 * 110.57373 * 214.30052 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3747 -0.0057 5 6 1.9159 3.6073 0.0007 6 6 3.2991 3.6846 -0.0002 7 6 4.0599 2.5182 -0.0001 8 6 3.4310 1.2840 0.0000 9 6 4.2516 0.0199 -0.0005 10 6 4.5292 -0.4073 -1.4432 11 6 5.3503 -1.6709 -1.4437 12 1 5.6443 -2.1243 -0.5086 13 6 5.7252 -2.2489 -2.6380 14 7 5.3667 -1.6972 -3.7768 15 14 6.7424 -3.8157 -2.6387 16 1 7.0120 -4.2315 -1.2388 17 1 5.9948 -4.8909 -3.3387 18 1 8.0287 -3.5705 -3.3390 19 8 5.3817 2.8593 -0.0004 20 6 5.4233 4.2384 0.4114 21 8 4.1451 4.7572 -0.0012 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2121 2.3170 -0.0097 26 1 1.3253 4.5115 0.0008 27 1 5.1959 0.1997 0.5133 28 1 3.7030 -0.7696 0.5130 29 1 3.5848 -0.5870 -1.9570 30 1 5.0777 0.3824 -1.9568 31 1 5.6308 -2.1036 -4.6169 32 1 5.5356 4.3117 1.4932 33 1 6.2319 4.7652 -0.0952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:59 Heat of formation + Delta-G solvation = -79.991613 kcal Electronic energy + Delta-G solvation = -18225.446491 eV Core-core repulsion = 15217.716029 eV Total energy + Delta-G solvation = -3007.730462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.88097 -39.47551 -36.31418 -36.02998 -33.86081 -31.97874 -29.17720 -28.93279 -27.02183 -25.51933 -25.02457 -22.24906 -22.17932 -20.26309 -18.37337 -17.41515 -17.12913 -16.68498 -16.14891 -15.49482 -15.18721 -15.02158 -14.39136 -14.02163 -13.43151 -13.14920 -12.97468 -12.72307 -12.61908 -12.21459 -12.10994 -11.82106 -11.42801 -11.16798 -10.87504 -10.68142 -10.37945 -10.10167 -9.71558 -9.56688 -8.98875 -8.25665 -8.01668 -7.51866 -5.90503 -3.92423 1.41372 1.52987 2.90452 3.36716 3.43493 3.45640 3.48306 3.81162 3.95757 4.53319 4.76152 4.83487 5.01297 5.04830 5.14184 5.26044 5.30240 5.45045 5.48462 5.60626 5.72653 6.00541 6.23451 6.30416 6.37063 6.44678 6.79230 6.84014 7.16160 7.34079 7.64315 7.79687 7.95718 8.10793 8.51449 9.14351 9.70353 11.20891 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.006841 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.393884 B = 4092.213657 C = 5098.342556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.140 3.860 4 C -0.204 4.204 5 C -0.077 4.077 6 C -0.011 4.011 7 C 0.072 3.928 8 C -0.073 4.073 9 C -0.067 4.067 10 C 0.033 3.967 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 O -0.294 6.294 20 C 0.212 3.788 21 O -0.314 6.314 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.079 0.921 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 10.481 9.476 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.094 3.906 4 C -0.223 4.223 5 C -0.096 4.096 6 C -0.054 4.054 7 C 0.027 3.973 8 C -0.074 4.074 9 C -0.105 4.105 10 C -0.004 4.004 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 O -0.210 6.210 20 C 0.100 3.900 21 O -0.231 6.231 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.155 0.845 26 H 0.149 0.851 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.005 10.366 9.186 15.997 hybrid contribution 0.511 -0.485 -0.154 0.722 sum -7.494 9.881 9.031 15.341 Atomic orbital electron populations 1.23061 0.78848 1.03953 1.00903 1.86217 1.20677 1.25725 1.88292 1.18248 0.90696 0.84503 0.97121 1.20869 0.99928 0.90956 1.10500 1.19582 0.89304 0.98012 1.02695 1.19625 0.92518 0.84631 1.08663 1.19147 0.82478 0.93465 1.02201 1.18513 0.90917 0.94133 1.03880 1.20619 0.96743 0.90875 1.02214 1.19035 0.96824 0.95926 0.88586 1.21278 1.32765 1.08998 0.92311 0.92582 1.25017 0.96328 0.97474 0.95666 1.69992 1.46421 1.39908 0.97175 0.86551 0.80024 0.83484 0.78030 1.19728 1.21070 1.21089 1.87461 1.21700 1.27509 1.84303 1.25566 0.86634 0.78196 0.99631 1.87307 1.19674 1.30635 1.85479 0.92700 0.92993 0.88213 0.84453 0.85062 0.92156 0.91341 0.96285 0.96654 0.93175 0.90394 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.12 9.54 -19.69 -0.19 -5.31 16 3 C 0.14 2.49 6.66 -39.26 -0.26 2.23 16 4 C -0.20 -2.92 9.03 -39.42 -0.36 -3.28 16 5 C -0.08 -1.12 10.05 -39.48 -0.40 -1.51 16 6 C -0.01 -0.18 7.15 -39.09 -0.28 -0.46 16 7 C 0.07 1.39 6.81 -39.10 -0.27 1.12 16 8 C -0.07 -1.49 5.16 -104.36 -0.54 -2.03 16 9 C -0.07 -1.54 5.05 -27.88 -0.14 -1.69 16 10 C 0.03 0.93 4.95 -27.89 -0.14 0.79 16 11 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -27.96 13.29 55.43 0.74 -27.22 16 15 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 O -0.29 -5.51 11.38 -45.73 -0.52 -6.03 16 20 C 0.21 2.84 8.89 101.05 0.90 3.74 16 21 O -0.31 -4.92 11.41 -46.03 -0.53 -5.45 16 22 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 23 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.14 1.48 6.29 -52.49 -0.33 1.15 16 26 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 27 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 28 H 0.07 1.53 7.52 -51.93 -0.39 1.14 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 286.63 15.07 4.32 4.32 Total: -1.00 -34.61 286.63 -6.11 -40.72 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -4.01 Total: -4.53 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.90 Total: -13.80 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.74 Total: -27.22 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.23 Total: -16.79 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.61 -6.11 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.267 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds