Wall clock time and date at job start Mon Mar 30 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38703 * 119.98487 * 359.72923 * 3 2 1 5 5 C 1.38221 * 120.07706 * 179.69565 * 4 3 2 6 6 C 1.38528 * 120.10382 * 0.61577 * 5 4 3 7 7 C 1.39260 * 119.91353 * 359.65110 * 6 5 4 8 8 C 1.38524 * 119.88534 * 0.04390 * 7 6 5 9 9 C 1.50703 * 120.00902 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46883 * 270.02030 * 9 8 7 11 11 C 1.50697 * 109.47197 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00040 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00385 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47026 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46851 * 120.00208 * 15 13 11 18 18 H 1.48498 * 109.46948 * 240.00550 * 15 13 11 19 19 O 1.36513 * 108.64507 * 180.02562 * 7 6 5 20 20 C 1.43986 * 105.50117 * 17.28041 * 19 7 6 21 21 O 1.36604 * 131.46736 * 179.65147 * 6 5 4 22 22 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.95901 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.94609 * 180.27991 * 5 4 3 27 27 H 1.08997 * 109.46699 * 30.01469 * 9 8 7 28 28 H 1.08994 * 109.47529 * 150.01956 * 9 8 7 29 29 H 1.09003 * 109.47213 * 299.99643 * 10 9 8 30 30 H 1.09008 * 109.47164 * 59.99532 * 10 9 8 31 31 H 0.96994 * 120.00024 * 179.97438 * 14 13 11 32 32 H 1.09005 * 110.56504 * 91.42338 * 20 19 7 33 33 H 1.08991 * 110.57373 * 214.30052 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3747 -0.0057 5 6 1.9159 3.6073 0.0007 6 6 3.2991 3.6846 -0.0002 7 6 4.0599 2.5182 -0.0001 8 6 3.4310 1.2840 0.0000 9 6 4.2516 0.0199 -0.0005 10 6 4.5292 -0.4073 -1.4432 11 6 5.3503 -1.6709 -1.4437 12 1 5.6443 -2.1243 -0.5086 13 6 5.7252 -2.2489 -2.6380 14 7 5.3667 -1.6972 -3.7768 15 14 6.7424 -3.8157 -2.6387 16 1 7.0120 -4.2315 -1.2388 17 1 5.9948 -4.8909 -3.3387 18 1 8.0287 -3.5705 -3.3390 19 8 5.3817 2.8593 -0.0004 20 6 5.4233 4.2384 0.4114 21 8 4.1451 4.7572 -0.0012 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2121 2.3170 -0.0097 26 1 1.3253 4.5115 0.0008 27 1 5.1959 0.1997 0.5133 28 1 3.7030 -0.7696 0.5130 29 1 3.5848 -0.5870 -1.9570 30 1 5.0777 0.3824 -1.9568 31 1 5.6308 -2.1036 -4.6169 32 1 5.5356 4.3117 1.4932 33 1 6.2319 4.7652 -0.0952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:59 Heat of formation + Delta-G solvation = -103.647280 kcal Electronic energy + Delta-G solvation = -18226.472278 eV Core-core repulsion = 15217.716029 eV Total energy + Delta-G solvation = -3008.756249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.11544 -40.70084 -37.59932 -37.29521 -35.82304 -33.90181 -30.71273 -30.33723 -28.07358 -26.96995 -26.62904 -23.96591 -23.46860 -22.01210 -19.56444 -18.69744 -18.62214 -18.25528 -17.75342 -16.71451 -16.48288 -16.35640 -16.16038 -15.30752 -15.01340 -14.75837 -14.30269 -14.09183 -13.93419 -13.78698 -13.72141 -13.26359 -12.87701 -12.83245 -12.51652 -12.40199 -11.91010 -11.79405 -11.60934 -11.20253 -11.13554 -10.57660 -9.47350 -8.75019 -8.20070 -6.32804 0.13585 0.24141 1.38293 1.40026 1.53769 1.72877 2.32862 2.40319 2.56483 2.83540 3.11864 3.49547 3.82426 3.88293 3.95872 4.09599 4.28213 4.37692 4.49380 4.50947 4.54418 4.70429 4.80071 4.87005 5.07428 5.11115 5.19454 5.21045 5.31039 5.47200 5.72256 5.81541 6.10153 6.21337 6.48201 6.82722 7.35984 8.92227 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.006841 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.393884 B = 4092.213657 C = 5098.342556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.132 3.868 4 C -0.188 4.188 5 C -0.062 4.062 6 C -0.021 4.021 7 C 0.050 3.950 8 C -0.119 4.119 9 C -0.048 4.048 10 C 0.047 3.953 11 C -0.543 4.543 12 H 0.061 0.939 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.277 1.277 19 O -0.330 6.330 20 C 0.203 3.797 21 O -0.318 6.318 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.181 0.819 26 H 0.173 0.827 27 H 0.051 0.949 28 H 0.066 0.934 29 H -0.010 1.010 30 H -0.023 1.023 31 H 0.264 0.736 32 H 0.107 0.893 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 11.058 10.347 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.086 3.914 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.065 4.065 7 C 0.005 3.995 8 C -0.120 4.120 9 C -0.086 4.086 10 C 0.010 3.990 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.202 1.202 19 O -0.246 6.246 20 C 0.093 3.907 21 O -0.235 6.235 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.130 0.870 25 H 0.199 0.801 26 H 0.191 0.809 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.008 0.992 30 H -0.004 1.004 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.205 10.956 10.074 17.500 hybrid contribution 0.810 -0.588 -0.428 1.089 sum -8.395 10.368 9.646 16.463 Atomic orbital electron populations 1.23447 0.75904 1.05640 1.02873 1.86168 1.23870 1.26140 1.88265 1.18437 0.90067 0.85942 0.96930 1.21315 1.01764 0.89454 1.08117 1.20154 0.88527 0.99600 0.99703 1.19917 0.93490 0.83972 1.09111 1.19383 0.83107 0.94157 1.02832 1.18472 0.92302 0.93176 1.08068 1.20203 0.97037 0.92829 0.98521 1.18787 0.94465 0.94468 0.91256 1.21689 1.33548 1.09925 0.92920 0.92105 1.26054 0.97426 1.01463 0.94989 1.70136 1.47482 1.41816 0.98020 0.85319 0.78104 0.78419 0.78708 1.18462 1.19927 1.20220 1.87397 1.22094 1.30279 1.84875 1.26108 0.86639 0.76139 1.01826 1.87275 1.20219 1.30264 1.85765 0.91429 0.90074 0.86963 0.80140 0.80947 0.93042 0.91494 0.99209 1.00427 0.92726 0.87504 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -11.41 9.54 -93.35 -0.89 -12.30 16 3 C 0.13 4.67 6.66 22.48 0.15 4.81 16 4 C -0.19 -4.86 9.03 22.38 0.20 -4.66 16 5 C -0.06 -1.59 10.05 22.33 0.22 -1.36 16 6 C -0.02 -0.69 7.15 22.58 0.16 -0.52 16 7 C 0.05 1.98 6.81 22.58 0.15 2.13 16 8 C -0.12 -5.03 5.16 -19.70 -0.10 -5.13 16 9 C -0.05 -2.37 5.05 29.85 0.15 -2.22 16 10 C 0.05 2.81 4.95 29.85 0.15 2.96 16 11 C -0.54 -33.44 9.11 25.60 0.23 -33.21 16 12 H 0.06 3.59 7.74 -2.91 -0.02 3.56 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 14 N -0.93 -60.05 13.29 21.45 0.28 -59.77 16 15 Si 0.97 46.33 29.54 68.60 2.03 48.35 16 16 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 O -0.33 -12.80 11.38 -76.21 -0.87 -13.67 16 20 C 0.20 5.30 8.89 113.37 1.01 6.30 16 21 O -0.32 -9.52 11.41 -77.27 -0.88 -10.41 16 22 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16 23 H 0.08 1.19 7.67 -2.39 -0.02 1.17 16 24 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.18 3.01 6.29 -2.91 -0.02 2.99 16 26 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.05 2.50 8.08 -2.39 -0.02 2.48 16 28 H 0.07 3.18 7.52 -2.39 -0.02 3.16 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H -0.02 -1.49 8.14 -2.38 -0.02 -1.51 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -79.31 286.63 4.69 -74.62 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.12 Total: 2.29 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.90 Total: -29.12 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.28 Total: -59.77 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -2.64 Total: -36.37 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.31 4.69 -74.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.030 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds