Wall clock time and date at job start Mon Mar 30 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 C 1.50706 * 109.46840 * 239.99623 * 2 1 3 5 5 H 1.07996 * 119.99871 * 239.99811 * 4 2 1 6 6 C 1.37872 * 119.99476 * 60.00706 * 4 2 1 7 7 N 1.31516 * 120.00578 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99417 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47623 * 59.99963 * 8 6 4 10 10 H 1.48510 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47274 * 299.99568 * 8 6 4 12 12 C 1.50698 * 109.46982 * 120.00091 * 2 1 3 13 13 C 1.38259 * 119.95869 * 239.99866 * 12 2 1 14 14 C 1.38490 * 120.09773 * 179.69926 * 13 12 2 15 15 C 1.39296 * 119.92254 * 0.27366 * 14 13 12 16 16 C 1.38495 * 119.87880 * 0.02562 * 15 14 13 17 17 C 1.38664 * 119.95791 * 60.25425 * 12 2 1 18 18 O 1.35971 * 119.98687 * 0.02562 * 17 12 2 19 19 O 1.36506 * 108.64365 * 180.02562 * 15 14 13 20 20 C 1.43985 * 105.49739 * 342.70530 * 19 15 14 21 21 O 1.36598 * 131.46689 * 180.27140 * 14 13 12 22 22 H 1.08995 * 109.47006 * 300.00358 * 1 2 3 23 23 H 1.09003 * 109.46954 * 59.99718 * 1 2 3 24 24 H 1.08992 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46546 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46968 * 299.99441 * 3 2 1 27 27 H 1.08998 * 109.46967 * 60.00488 * 3 2 1 28 28 H 0.96996 * 119.99806 * 179.97438 * 7 6 4 29 29 H 1.08002 * 119.95284 * 359.97438 * 13 12 2 30 30 H 1.07996 * 120.00620 * 180.02562 * 16 15 14 31 31 H 0.96699 * 114.00327 * 270.27747 * 18 17 12 32 32 H 1.09005 * 110.56436 * 268.58374 * 20 19 15 33 33 H 1.08999 * 110.56797 * 145.72121 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0082 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 6 2.0324 -0.7104 1.2304 13 6 2.8272 -0.0377 2.1400 14 6 3.2852 -0.6860 3.2749 15 6 2.9490 -2.0194 3.4968 16 6 2.1578 -2.6930 2.5813 17 6 1.7012 -2.0395 1.4463 18 8 0.9241 -2.7009 0.5477 19 8 3.5165 -2.4229 4.6710 20 6 4.5376 -1.4495 4.9592 21 8 4.0644 -0.2546 4.3106 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 0.7090 1.1613 -3.4844 29 1 3.0876 0.9961 1.9675 30 1 1.8955 -3.7267 2.7515 31 1 -0.0242 -2.6369 0.7255 32 1 5.4933 -1.7609 4.5375 33 1 4.6251 -1.2932 6.0344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:07 Heat of formation + Delta-G solvation = -92.671652 kcal Electronic energy + Delta-G solvation = -18802.178459 eV Core-core repulsion = 15793.898149 eV Total energy + Delta-G solvation = -3008.280310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.06820 -40.44147 -37.40012 -37.07313 -36.29539 -33.32788 -30.72563 -29.60130 -27.69223 -27.15111 -26.49896 -24.13250 -23.49683 -21.11646 -19.74312 -18.70558 -18.35173 -17.84544 -17.34160 -17.03730 -16.42999 -15.74893 -15.39633 -15.14421 -14.88834 -14.59921 -14.40959 -13.92525 -13.49038 -13.31476 -13.17582 -12.80017 -12.62160 -12.56075 -12.25817 -12.09462 -12.06557 -11.55351 -11.31258 -10.96412 -10.65490 -10.28261 -9.69950 -8.76796 -7.93239 -6.05145 0.16815 0.27892 1.45957 1.47295 1.54003 1.81671 2.46450 2.56216 2.61988 3.30201 3.53345 3.56909 3.89129 4.08080 4.18782 4.28044 4.31303 4.61157 4.86073 4.92453 4.95404 5.04095 5.11471 5.15613 5.24970 5.44715 5.45596 5.56900 5.75291 5.78144 6.14889 6.19754 6.27151 6.51579 6.95398 7.02522 7.59321 9.05373 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.006943 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.585778 B = 4031.876390 C = 4220.815944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.100 3.900 3 C -0.129 4.129 4 C -0.488 4.488 5 H 0.039 0.961 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.939 3.061 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.282 1.282 12 C -0.065 4.065 13 C -0.105 4.105 14 C 0.012 3.988 15 C 0.019 3.981 16 C -0.130 4.130 17 C 0.118 3.882 18 O -0.482 6.482 19 O -0.320 6.320 20 C 0.204 3.796 21 O -0.324 6.324 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.258 0.742 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -4.010 12.158 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 C -0.186 4.186 4 C -0.526 4.526 5 H 0.058 0.942 6 C -0.173 4.173 7 N -0.546 5.546 8 Si 0.767 3.233 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.208 1.208 12 C -0.066 4.066 13 C -0.124 4.124 14 C -0.032 4.032 15 C -0.025 4.025 16 C -0.149 4.149 17 C 0.073 3.927 18 O -0.294 6.294 19 O -0.237 6.237 20 C 0.094 3.906 21 O -0.241 6.241 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.172 0.828 31 H 0.254 0.746 32 H 0.116 0.884 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.145 -4.013 11.979 13.019 hybrid contribution 0.072 -0.223 -0.740 0.777 sum 3.218 -4.237 11.238 12.434 Atomic orbital electron populations 1.21727 0.96475 1.00010 0.99985 1.17101 0.93093 0.91668 0.88139 1.21816 0.98230 0.98290 1.00313 1.21061 1.30339 1.10711 0.90539 0.94244 1.25379 0.95622 0.95689 1.00622 1.69901 1.37774 1.23596 1.23335 0.85918 0.78373 0.78940 0.80114 1.20381 1.21046 1.20763 1.20696 0.96020 0.93695 0.96221 1.20083 1.00187 1.01604 0.90513 1.19810 0.99383 0.92767 0.91257 1.19442 1.01998 0.92592 0.88513 1.20301 1.01646 1.01441 0.91551 1.17809 0.96888 0.89418 0.88622 1.84932 1.21496 1.73131 1.49817 1.87268 1.50737 1.50394 1.35312 1.26116 0.90545 0.72123 1.01854 1.87302 1.64175 1.32100 1.40562 0.95801 0.91721 0.93697 0.95581 0.91671 0.94998 0.93265 0.84372 0.82848 0.74582 0.88377 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.03 71.98 0.58 -4.94 16 2 C 0.10 4.68 0.48 -53.67 -0.03 4.65 16 3 C -0.13 -5.95 6.91 71.98 0.50 -5.45 16 4 C -0.49 -25.78 6.91 25.60 0.18 -25.61 16 5 H 0.04 2.19 7.52 -2.91 -0.02 2.17 16 6 C 0.03 1.33 5.15 84.65 0.44 1.77 16 7 N -0.91 -48.89 9.35 21.45 0.20 -48.68 16 8 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C -0.07 -2.74 4.73 -19.76 -0.09 -2.83 16 13 C -0.11 -4.08 8.98 22.33 0.20 -3.88 16 14 C 0.01 0.42 7.15 22.58 0.16 0.58 16 15 C 0.02 0.63 7.15 22.59 0.16 0.79 16 16 C -0.13 -4.37 10.00 22.44 0.22 -4.15 16 17 C 0.12 4.50 6.19 22.48 0.14 4.64 16 18 O -0.48 -18.03 11.05 -93.22 -1.03 -19.06 16 19 O -0.32 -9.22 11.40 -76.12 -0.87 -10.09 16 20 C 0.20 4.47 8.89 113.37 1.01 5.48 16 21 O -0.32 -9.95 11.41 -77.21 -0.88 -10.83 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 24 H 0.04 1.82 5.32 -2.39 -0.01 1.80 16 25 H 0.03 1.17 7.51 -2.38 -0.02 1.15 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 27 H 0.03 1.30 7.51 -2.39 -0.02 1.28 16 28 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.14 5.23 5.88 -2.91 -0.02 5.21 16 30 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.40 11.43 7.55 -74.06 -0.56 10.87 16 32 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -61.43 268.86 3.50 -57.92 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.59 Total: 14.18 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.46 Total: -28.95 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.20 Total: -48.68 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -2.78 Total: -39.98 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.43 3.50 -57.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.751 kcal (2) G-P(sol) polarization free energy of solvation -61.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds