Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47212 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47421 * 210.00302 * 8 6 4 11 11 H 1.48504 * 109.47342 * 330.00327 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.38775 * 119.99752 * 275.27590 * 12 2 1 14 14 N 1.30413 * 126.38305 * 359.41199 * 13 12 2 15 15 O 1.41333 * 109.62539 * 179.88547 * 14 13 12 16 16 C 1.34952 * 109.48099 * 0.39506 * 15 14 13 17 17 C 1.38967 * 133.20929 * 179.77633 * 16 15 14 18 18 C 1.37783 * 119.97190 * 179.97438 * 17 16 15 19 19 C 1.38940 * 120.55684 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.86074 * 180.02562 * 19 18 17 21 21 C 1.37869 * 120.28193 * 359.97438 * 19 18 17 22 22 C 1.39540 * 119.67187 * 0.03644 * 21 19 18 23 23 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 25 25 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 26 26 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 28 28 H 1.08001 * 120.01071 * 0.02562 * 17 16 15 29 29 H 1.07997 * 119.71696 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.16309 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1455 0.0002 2.3930 14 7 1.8778 1.2612 2.5904 15 8 2.1306 1.5943 3.9405 16 6 2.5777 0.5034 4.5971 17 6 2.9700 0.2781 5.9111 18 6 3.3898 -0.9757 6.2988 19 6 3.4258 -2.0222 5.3856 20 9 3.8393 -3.2460 5.7811 21 6 3.0402 -1.8174 4.0779 22 6 2.6135 -0.5518 3.6737 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7088 1.1614 -3.4844 27 1 2.2490 -1.6319 1.1525 28 1 2.9451 1.0853 6.6282 29 1 3.6934 -1.1463 7.3210 30 1 3.0686 -2.6323 3.3698 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260215605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = 16.765207 kcal Electronic energy + Delta-G solvation = -17400.437097 eV Core-core repulsion = 14305.734772 eV Total energy + Delta-G solvation = -3094.702326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.92242 -41.28942 -37.31233 -36.43408 -33.50204 -31.66148 -30.26517 -29.52992 -28.38636 -25.34862 -23.57071 -22.61685 -21.57246 -19.95213 -18.19692 -17.55678 -16.68003 -16.53338 -15.87800 -15.27068 -15.19099 -14.96958 -14.45122 -14.14730 -13.72559 -13.40075 -12.71874 -12.67373 -12.46716 -11.78295 -11.57464 -11.29197 -11.15562 -10.95039 -10.81657 -10.54750 -10.33506 -10.24053 -9.20289 -9.12659 -8.63191 -8.48126 -7.47079 -6.22679 -4.32811 0.67371 1.09487 2.71004 2.94033 3.19458 3.26588 3.28546 3.47528 3.63878 4.10958 4.27839 4.43102 4.65154 4.79194 5.03381 5.10420 5.29365 5.63062 5.74140 5.86273 5.91156 6.08494 6.58981 6.65719 6.88126 6.96623 7.25735 7.47692 7.54779 7.74101 7.97795 8.13712 8.43707 8.75173 9.34432 10.83400 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.005258 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.344718 B = 5323.807804 C = 5960.755158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.270 3.730 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.668 5.668 13 C 0.379 3.621 14 N -0.354 5.354 15 O -0.105 6.105 16 C 0.094 3.906 17 C -0.109 4.109 18 C -0.097 4.097 19 C 0.052 3.948 20 F -0.140 7.140 21 C -0.070 4.070 22 C -0.176 4.176 23 H 0.029 0.971 24 H 0.016 0.984 25 H 0.094 0.906 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -4.674 14.175 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.169 3.831 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.307 5.307 13 C 0.106 3.894 14 N -0.127 5.127 15 O -0.105 6.105 16 C 0.038 3.962 17 C -0.129 4.129 18 C -0.117 4.117 19 C 0.033 3.967 20 F -0.118 7.118 21 C -0.091 4.091 22 C -0.181 4.181 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.240 0.760 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.118 -3.283 13.495 14.235 hybrid contribution 0.670 -1.781 -0.581 1.990 sum 3.788 -5.064 12.915 14.380 Atomic orbital electron populations 1.22157 0.98194 0.99523 1.01135 1.18951 0.91176 0.93666 0.79306 0.93293 1.21136 1.32887 1.13542 0.90011 0.91860 1.24871 0.94658 0.94908 0.99098 1.69886 1.35551 1.22265 1.24172 0.86392 0.79202 0.79263 0.81945 1.20443 1.20953 1.19796 1.44971 1.68258 1.12174 1.05264 1.21331 0.90479 0.90624 0.86916 1.80590 1.33476 1.11196 0.87425 1.89193 1.73729 1.28565 1.19042 1.20237 0.94344 0.87876 0.93717 1.19788 1.03276 0.97629 0.92191 1.20964 0.99560 0.91211 0.99947 1.17190 1.05249 0.81166 0.93107 1.91496 1.88391 1.40742 1.91200 1.20546 0.97266 0.96457 0.94856 1.20405 1.09715 0.95397 0.92601 0.95162 0.96523 0.88772 0.92367 0.75987 0.83651 0.83555 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.27 37.16 0.34 -3.28 16 2 C 0.27 6.59 2.73 -69.08 -0.19 6.40 16 3 H 0.05 1.36 7.83 -51.93 -0.41 0.95 16 4 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.13 11.32 55.43 0.63 -23.50 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.67 -13.61 5.23 -53.21 -0.28 -13.89 16 13 C 0.38 7.50 8.12 -153.64 -1.25 6.26 16 14 N -0.35 -7.68 12.29 32.52 0.40 -7.28 16 15 O -0.10 -2.00 12.06 7.32 0.09 -1.91 16 16 C 0.09 1.49 7.47 -38.55 -0.29 1.20 16 17 C -0.11 -1.26 10.06 -39.48 -0.40 -1.66 16 18 C -0.10 -1.01 9.99 -39.49 -0.39 -1.40 16 19 C 0.05 0.64 7.29 -39.46 -0.29 0.35 16 20 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 21 C -0.07 -0.95 10.07 -39.23 -0.40 -1.35 16 22 C -0.18 -2.89 6.35 -105.05 -0.67 -3.55 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.40 7.17 8.66 -40.82 -0.35 6.82 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -28.47 273.46 -6.67 -35.14 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.73 Total: 3.25 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.92 Total: -9.43 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.75 Total: -44.67 kcal Atomic # 8 Polarization: -2.00 SS G_CDS: 0.09 Total: -1.91 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.47 -6.67 -35.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.907 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds