Wall clock time and date at job start Mon Mar 30 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47212 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47421 * 210.00302 * 8 6 4 11 11 H 1.48504 * 109.47342 * 330.00327 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.38775 * 119.99752 * 275.27590 * 12 2 1 14 14 N 1.30413 * 126.38305 * 359.41199 * 13 12 2 15 15 O 1.41333 * 109.62539 * 179.88547 * 14 13 12 16 16 C 1.34952 * 109.48099 * 0.39506 * 15 14 13 17 17 C 1.38967 * 133.20929 * 179.77633 * 16 15 14 18 18 C 1.37783 * 119.97190 * 179.97438 * 17 16 15 19 19 C 1.38940 * 120.55684 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.86074 * 180.02562 * 19 18 17 21 21 C 1.37869 * 120.28193 * 359.97438 * 19 18 17 22 22 C 1.39540 * 119.67187 * 0.03644 * 21 19 18 23 23 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 25 25 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 26 26 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 28 28 H 1.08001 * 120.01071 * 0.02562 * 17 16 15 29 29 H 1.07997 * 119.71696 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.16309 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1455 0.0002 2.3930 14 7 1.8778 1.2612 2.5904 15 8 2.1306 1.5943 3.9405 16 6 2.5777 0.5034 4.5971 17 6 2.9700 0.2781 5.9111 18 6 3.3898 -0.9757 6.2988 19 6 3.4258 -2.0222 5.3856 20 9 3.8393 -3.2460 5.7811 21 6 3.0402 -1.8174 4.0779 22 6 2.6135 -0.5518 3.6737 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7088 1.1614 -3.4844 27 1 2.2490 -1.6319 1.1525 28 1 2.9451 1.0853 6.6282 29 1 3.6934 -1.1463 7.3210 30 1 3.0686 -2.6323 3.3698 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260215605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:34 Heat of formation + Delta-G solvation = 0.215587 kcal Electronic energy + Delta-G solvation = -17401.154743 eV Core-core repulsion = 14305.734772 eV Total energy + Delta-G solvation = -3095.419971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.89704 -42.58977 -38.48545 -38.07816 -35.26118 -33.24305 -31.50753 -30.75662 -30.08772 -27.36402 -24.73290 -23.78709 -23.20412 -21.56398 -19.51946 -18.87454 -18.27308 -17.65245 -17.10715 -16.98490 -16.40901 -16.34680 -15.87069 -15.43053 -15.07363 -14.54351 -14.44254 -14.24801 -13.76234 -13.40279 -13.02314 -12.86978 -12.75982 -12.55542 -12.33477 -12.22810 -12.18790 -11.91986 -11.15039 -10.63145 -10.23171 -9.72964 -9.00075 -8.21753 -6.39368 -0.40122 0.03488 1.32840 1.44355 1.44568 1.54688 1.61205 2.21169 2.38648 2.44055 3.03677 3.09443 3.34651 3.53655 3.78666 3.94925 4.25812 4.38077 4.66940 4.77925 4.84000 4.92141 4.96051 5.00553 5.04079 5.35047 5.56546 5.58596 5.72735 5.93919 6.10462 6.42933 6.64139 6.99939 7.32872 8.84592 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.005258 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.344718 B = 5323.807804 C = 5960.755158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.280 3.720 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.669 5.669 13 C 0.372 3.628 14 N -0.404 5.404 15 O -0.115 6.115 16 C 0.069 3.931 17 C -0.096 4.096 18 C -0.073 4.073 19 C 0.059 3.941 20 F -0.135 7.135 21 C -0.077 4.077 22 C -0.193 4.193 23 H 0.039 0.961 24 H 0.015 0.985 25 H 0.070 0.930 26 H 0.267 0.733 27 H 0.417 0.583 28 H 0.181 0.819 29 H 0.192 0.808 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -6.498 16.183 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.177 3.823 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.309 5.309 13 C 0.100 3.900 14 N -0.175 5.175 15 O -0.119 6.119 16 C 0.015 3.985 17 C -0.115 4.115 18 C -0.093 4.093 19 C 0.040 3.960 20 F -0.114 7.114 21 C -0.097 4.097 22 C -0.198 4.198 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.255 0.745 28 H 0.198 0.802 29 H 0.209 0.791 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.334 -5.135 15.532 16.923 hybrid contribution 0.352 -1.242 -0.990 1.627 sum 4.686 -6.377 14.542 16.556 Atomic orbital electron populations 1.21970 0.98159 0.99639 0.99864 1.18517 0.91125 0.91802 0.80830 0.97635 1.21472 1.32931 1.13809 0.90610 0.90896 1.25750 0.94751 0.95523 1.02184 1.70029 1.36694 1.23707 1.24819 0.85324 0.78918 0.78053 0.77925 1.19614 1.21109 1.18985 1.44533 1.69083 1.12551 1.04722 1.21521 0.90129 0.90657 0.87700 1.80458 1.34609 1.12757 0.89660 1.89102 1.74891 1.29892 1.18003 1.20828 0.95647 0.86721 0.95323 1.20269 1.01417 0.99193 0.90662 1.21459 0.96731 0.89604 1.01472 1.17335 1.04184 0.81719 0.92798 1.91519 1.88204 1.40672 1.91020 1.20675 0.97262 0.95669 0.96132 1.20273 1.11641 0.96898 0.90973 0.94152 0.96638 0.91089 0.92367 0.74550 0.80188 0.79063 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.82 9.27 71.98 0.67 -6.16 16 2 C 0.28 14.20 2.73 44.25 0.12 14.32 16 3 H 0.01 0.34 7.83 -2.39 -0.02 0.32 16 4 C -0.55 -28.64 8.73 25.60 0.22 -28.41 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -51.45 11.32 21.45 0.24 -51.20 16 8 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.67 -27.99 5.23 -322.27 -1.69 -29.67 16 13 C 0.37 15.17 8.12 135.84 1.10 16.27 16 14 N -0.40 -18.35 12.29 -51.04 -0.63 -18.97 16 15 O -0.12 -4.50 12.06 28.58 0.34 -4.16 16 16 C 0.07 2.11 7.47 22.94 0.17 2.29 16 17 C -0.10 -1.87 10.06 22.34 0.22 -1.65 16 18 C -0.07 -1.16 9.99 22.33 0.22 -0.94 16 19 C 0.06 1.23 7.29 22.35 0.16 1.39 16 20 F -0.14 -2.77 17.26 44.97 0.78 -2.00 16 21 C -0.08 -1.93 10.07 22.50 0.23 -1.70 16 22 C -0.19 -6.23 6.35 -20.14 -0.13 -6.36 16 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 3.86 6.07 -2.38 -0.01 3.85 16 26 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.42 14.92 8.66 -92.71 -0.80 14.11 16 28 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -64.22 273.46 4.90 -59.32 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.38 Total: 12.75 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 3.44 Total: -9.52 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -2.07 Total: -99.85 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.34 Total: -4.16 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -64.22 4.90 -59.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -64.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds