Wall clock time and date at job start Mon Mar 30 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 C 1.50697 * 109.47268 * 120.00857 * 2 1 3 5 5 H 1.07999 * 119.99880 * 119.99853 * 4 2 1 6 6 C 1.37877 * 119.99671 * 299.99481 * 4 2 1 7 7 N 1.31506 * 120.00273 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47171 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47226 * 120.00155 * 8 6 4 11 11 H 1.48501 * 109.47122 * 240.00283 * 8 6 4 12 12 N 1.46509 * 109.46933 * 240.00751 * 2 1 3 13 13 C 1.38771 * 120.00243 * 84.99436 * 12 2 1 14 14 N 1.30427 * 126.37948 * 0.03028 * 13 12 2 15 15 O 1.41326 * 109.62332 * 179.97438 * 14 13 12 16 16 C 1.34951 * 109.48326 * 359.73594 * 15 14 13 17 17 C 1.38965 * 133.20172 * 179.50845 * 16 15 14 18 18 C 1.37788 * 119.97116 * 180.46159 * 17 16 15 19 19 C 1.38943 * 120.55595 * 0.28537 * 18 17 16 20 20 F 1.35098 * 119.86085 * 179.97438 * 19 18 17 21 21 C 1.37869 * 120.27936 * 359.97241 * 19 18 17 22 22 C 1.39540 * 119.67802 * 0.02562 * 21 19 18 23 23 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46518 * 299.99348 * 1 2 3 25 25 H 1.08993 * 109.47251 * 59.99385 * 1 2 3 26 26 H 0.96998 * 120.00562 * 179.97438 * 7 6 4 27 27 H 0.96997 * 119.99435 * 264.99946 * 12 2 1 28 28 H 1.08002 * 120.01712 * 0.74660 * 17 16 15 29 29 H 1.07998 * 119.71795 * 180.29974 * 18 17 16 30 30 H 1.08002 * 120.16102 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9430 0.8294 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.1475 -2.2868 3.6035 10 1 3.1474 -0.1863 4.8159 11 1 1.1680 -1.5870 4.8163 12 7 2.0184 -0.6905 -1.1963 13 6 2.1508 0.0019 -2.3917 14 7 1.8789 1.2619 -2.5901 15 8 2.1427 1.5981 -3.9372 16 6 2.5986 0.5095 -4.5917 17 6 2.9913 0.2847 -5.9056 18 6 3.4131 -0.9685 -6.2931 19 6 3.4447 -2.0165 -5.3813 20 9 3.8602 -3.2397 -5.7765 21 6 3.0536 -1.8133 -4.0749 22 6 2.6246 -0.5484 -3.6709 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7084 1.1605 3.4844 27 1 2.2491 -1.6316 -1.1528 28 1 2.9703 1.0929 -6.6216 29 1 3.7220 -1.1375 -7.3140 30 1 3.0785 -2.6293 -3.3679 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260215609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:36 Heat of formation + Delta-G solvation = 16.710634 kcal Electronic energy + Delta-G solvation = -17400.291162 eV Core-core repulsion = 14305.586470 eV Total energy + Delta-G solvation = -3094.704692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.92206 -41.28934 -37.31170 -36.43403 -33.50343 -31.66203 -30.26446 -29.52999 -28.38752 -25.35109 -23.57063 -22.61692 -21.57246 -19.95335 -18.19703 -17.55733 -16.68046 -16.53462 -15.87815 -15.27049 -15.19602 -14.96897 -14.45086 -14.14659 -13.72263 -13.39911 -12.71959 -12.67240 -12.47306 -11.78273 -11.57892 -11.29038 -11.15124 -10.96944 -10.80681 -10.54263 -10.33763 -10.23602 -9.20159 -9.12124 -8.63463 -8.48272 -7.47122 -6.22955 -4.33004 0.67341 1.09485 2.70973 2.94072 3.18684 3.26703 3.29156 3.47520 3.63880 4.10952 4.27679 4.43097 4.65165 4.79205 5.03370 5.10276 5.29360 5.63046 5.74134 5.86273 5.91157 6.08483 6.58976 6.65614 6.88257 6.96673 7.25630 7.47663 7.54917 7.74061 7.97665 8.13547 8.43740 8.75242 9.34346 10.83173 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.005260 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.385948 B = 5322.289983 C = 5958.883460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.270 3.730 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.668 5.668 13 C 0.379 3.621 14 N -0.354 5.354 15 O -0.105 6.105 16 C 0.094 3.906 17 C -0.109 4.109 18 C -0.097 4.097 19 C 0.052 3.948 20 F -0.140 7.140 21 C -0.070 4.070 22 C -0.176 4.176 23 H 0.029 0.971 24 H 0.094 0.906 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -4.666 -14.174 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.169 3.831 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.307 5.307 13 C 0.106 3.894 14 N -0.127 5.127 15 O -0.105 6.105 16 C 0.038 3.962 17 C -0.129 4.129 18 C -0.117 4.117 19 C 0.033 3.967 20 F -0.118 7.118 21 C -0.091 4.091 22 C -0.181 4.181 23 H 0.048 0.952 24 H 0.112 0.888 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.240 0.760 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.158 -3.285 -13.500 14.248 hybrid contribution 0.683 -1.764 0.588 1.981 sum 3.841 -5.049 -12.912 14.386 Atomic orbital electron populations 1.22153 0.98179 0.99522 1.01135 1.18960 0.91196 0.93667 0.79313 0.93297 1.21175 1.32806 1.13528 0.89999 0.91803 1.24871 0.94650 0.94919 0.99108 1.69892 1.35581 1.22339 1.24064 0.86342 0.78648 0.79515 0.82316 1.19686 1.20759 1.20765 1.44973 1.68211 1.12113 1.05370 1.21331 0.90462 0.90632 0.86926 1.80594 1.33203 1.11257 0.87641 1.89191 1.73281 1.28696 1.19360 1.20239 0.94355 0.87864 0.93715 1.19789 1.03325 0.97628 0.92145 1.20966 0.99541 0.91213 0.99960 1.17191 1.05210 0.81174 0.93138 1.91496 1.88330 1.40801 1.91201 1.20546 0.97231 0.96488 0.94858 1.20403 1.09679 0.95346 0.92688 0.95160 0.88772 0.96521 0.92420 0.75985 0.83651 0.83555 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.28 37.16 0.34 -3.27 16 2 C 0.27 6.58 2.73 -69.07 -0.19 6.39 16 3 H 0.05 1.36 7.83 -51.93 -0.41 0.95 16 4 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.12 11.32 55.43 0.63 -23.50 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.67 -13.60 5.23 -53.21 -0.28 -13.88 16 13 C 0.38 7.50 8.12 -153.64 -1.25 6.25 16 14 N -0.35 -7.68 12.29 32.52 0.40 -7.28 16 15 O -0.10 -2.00 12.06 7.32 0.09 -1.91 16 16 C 0.09 1.49 7.47 -38.55 -0.29 1.20 16 17 C -0.11 -1.26 10.06 -39.48 -0.40 -1.66 16 18 C -0.10 -1.01 9.99 -39.48 -0.39 -1.40 16 19 C 0.05 0.64 7.29 -39.46 -0.29 0.35 16 20 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 21 C -0.07 -0.95 10.07 -39.23 -0.40 -1.35 16 22 C -0.18 -2.88 6.35 -105.05 -0.67 -3.55 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.40 7.18 8.66 -40.82 -0.35 6.82 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -28.48 273.47 -6.67 -35.15 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.73 Total: 3.22 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.92 Total: -9.42 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.75 Total: -44.66 kcal Atomic # 8 Polarization: -2.00 SS G_CDS: 0.09 Total: -1.91 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.48 -6.67 -35.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.865 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds