Wall clock time and date at job start Mon Mar 30 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 C 1.50697 * 109.47268 * 120.00857 * 2 1 3 5 5 H 1.07999 * 119.99880 * 119.99853 * 4 2 1 6 6 C 1.37877 * 119.99671 * 299.99481 * 4 2 1 7 7 N 1.31506 * 120.00273 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99992 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47171 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47226 * 120.00155 * 8 6 4 11 11 H 1.48501 * 109.47122 * 240.00283 * 8 6 4 12 12 N 1.46509 * 109.46933 * 240.00751 * 2 1 3 13 13 C 1.38771 * 120.00243 * 84.99436 * 12 2 1 14 14 N 1.30427 * 126.37948 * 0.03028 * 13 12 2 15 15 O 1.41326 * 109.62332 * 179.97438 * 14 13 12 16 16 C 1.34951 * 109.48326 * 359.73594 * 15 14 13 17 17 C 1.38965 * 133.20172 * 179.50845 * 16 15 14 18 18 C 1.37788 * 119.97116 * 180.46159 * 17 16 15 19 19 C 1.38943 * 120.55595 * 0.28537 * 18 17 16 20 20 F 1.35098 * 119.86085 * 179.97438 * 19 18 17 21 21 C 1.37869 * 120.27936 * 359.97241 * 19 18 17 22 22 C 1.39540 * 119.67802 * 0.02562 * 21 19 18 23 23 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46518 * 299.99348 * 1 2 3 25 25 H 1.08993 * 109.47251 * 59.99385 * 1 2 3 26 26 H 0.96998 * 120.00562 * 179.97438 * 7 6 4 27 27 H 0.96997 * 119.99435 * 264.99946 * 12 2 1 28 28 H 1.08002 * 120.01712 * 0.74660 * 17 16 15 29 29 H 1.07998 * 119.71795 * 180.29974 * 18 17 16 30 30 H 1.08002 * 120.16102 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9430 0.8294 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.1475 -2.2868 3.6035 10 1 3.1474 -0.1863 4.8159 11 1 1.1680 -1.5870 4.8163 12 7 2.0184 -0.6905 -1.1963 13 6 2.1508 0.0019 -2.3917 14 7 1.8789 1.2619 -2.5901 15 8 2.1427 1.5981 -3.9372 16 6 2.5986 0.5095 -4.5917 17 6 2.9913 0.2847 -5.9056 18 6 3.4131 -0.9685 -6.2931 19 6 3.4447 -2.0165 -5.3813 20 9 3.8602 -3.2397 -5.7765 21 6 3.0536 -1.8133 -4.0749 22 6 2.6246 -0.5484 -3.6709 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7084 1.1605 3.4844 27 1 2.2491 -1.6316 -1.1528 28 1 2.9703 1.0929 -6.6216 29 1 3.7220 -1.1375 -7.3140 30 1 3.0785 -2.6293 -3.3679 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260215609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:36 Heat of formation + Delta-G solvation = 0.152879 kcal Electronic energy + Delta-G solvation = -17401.009160 eV Core-core repulsion = 14305.586470 eV Total energy + Delta-G solvation = -3095.422690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.89666 -42.58949 -38.48458 -38.07799 -35.26251 -33.24324 -31.50672 -30.75671 -30.08814 -27.36668 -24.73268 -23.78701 -23.20403 -21.56484 -19.51977 -18.87514 -18.27532 -17.65275 -17.10635 -16.98852 -16.40984 -16.34581 -15.86898 -15.42785 -15.07255 -14.54303 -14.44441 -14.25218 -13.76215 -13.40809 -13.01802 -12.86967 -12.78436 -12.54364 -12.33425 -12.23715 -12.16983 -11.91711 -11.13952 -10.64113 -10.23157 -9.72978 -9.00069 -8.22005 -6.39524 -0.40142 0.03499 1.32836 1.43250 1.44392 1.55554 1.61345 2.21172 2.38617 2.43885 3.03681 3.09319 3.34672 3.53648 3.78668 3.94944 4.25827 4.38066 4.66917 4.77940 4.84045 4.92281 4.96067 5.00620 5.04088 5.35052 5.56664 5.58604 5.72818 5.93821 6.10431 6.42858 6.64304 6.99933 7.32792 8.84566 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.005260 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.385948 B = 5322.289983 C = 5958.883460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.280 3.720 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.261 1.261 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.669 5.669 13 C 0.372 3.628 14 N -0.404 5.404 15 O -0.115 6.115 16 C 0.069 3.931 17 C -0.096 4.096 18 C -0.073 4.073 19 C 0.059 3.941 20 F -0.135 7.135 21 C -0.077 4.077 22 C -0.193 4.193 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.015 0.985 26 H 0.267 0.733 27 H 0.417 0.583 28 H 0.181 0.819 29 H 0.192 0.808 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -6.488 -16.187 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.177 3.823 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.309 5.309 13 C 0.100 3.900 14 N -0.175 5.175 15 O -0.119 6.119 16 C 0.015 3.985 17 C -0.115 4.115 18 C -0.093 4.093 19 C 0.040 3.960 20 F -0.114 7.114 21 C -0.097 4.097 22 C -0.198 4.198 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.254 0.746 28 H 0.198 0.802 29 H 0.209 0.791 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.388 -5.134 -15.541 16.945 hybrid contribution 0.362 -1.224 1.000 1.621 sum 4.750 -6.358 -14.541 16.566 Atomic orbital electron populations 1.21966 0.98143 0.99648 0.99860 1.18526 0.91145 0.91802 0.80834 0.97635 1.21501 1.32835 1.13772 0.90595 0.90887 1.25748 0.94749 0.95539 1.02188 1.70032 1.36717 1.23772 1.24757 0.85279 0.78108 0.78483 0.78358 1.18536 1.20887 1.20345 1.44534 1.69039 1.12487 1.04825 1.21520 0.90121 0.90661 0.87705 1.80462 1.34347 1.12814 0.89867 1.89100 1.74446 1.30013 1.18328 1.20830 0.95652 0.86711 0.95324 1.20269 1.01467 0.99196 0.90613 1.21462 0.96723 0.89605 1.01474 1.17335 1.04146 0.81730 0.92828 1.91519 1.88143 1.40732 1.91021 1.20675 0.97230 0.95702 0.96129 1.20271 1.11598 0.96844 0.91070 0.94135 0.91095 0.96638 0.92369 0.74553 0.80188 0.79064 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 9.28 71.98 0.67 -6.15 16 2 C 0.28 14.17 2.73 44.25 0.12 14.29 16 3 H 0.01 0.34 7.83 -2.39 -0.02 0.32 16 4 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.45 11.32 21.45 0.24 -51.20 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 12 N -0.67 -27.98 5.23 -322.25 -1.68 -29.66 16 13 C 0.37 15.17 8.12 135.83 1.10 16.27 16 14 N -0.40 -18.34 12.29 -51.04 -0.63 -18.97 16 15 O -0.12 -4.50 12.06 28.60 0.34 -4.15 16 16 C 0.07 2.12 7.47 22.94 0.17 2.29 16 17 C -0.10 -1.87 10.06 22.34 0.22 -1.65 16 18 C -0.07 -1.16 9.99 22.33 0.22 -0.94 16 19 C 0.06 1.23 7.29 22.35 0.16 1.39 16 20 F -0.14 -2.77 17.26 44.97 0.78 -2.00 16 21 C -0.08 -1.93 10.07 22.50 0.23 -1.70 16 22 C -0.19 -6.23 6.35 -20.14 -0.13 -6.35 16 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 25 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.42 14.92 8.66 -92.71 -0.80 14.11 16 28 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -64.24 273.47 4.90 -59.33 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.38 Total: 12.67 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 3.44 Total: -9.47 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -2.07 Total: -99.84 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.34 Total: -4.15 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -64.24 4.90 -59.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.486 kcal (2) G-P(sol) polarization free energy of solvation -64.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds