Wall clock time and date at job start Mon Mar 30 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 103.00100 * 2 1 4 4 C 1.38992 * 120.07866 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.92003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 119.96212 * 180.02562 * 5 4 3 7 7 C 1.38325 * 120.08035 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.92357 * 179.72398 * 7 5 4 9 9 C 1.38281 * 120.16072 * 359.97438 * 7 5 4 10 10 C 1.50704 * 119.96230 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.47096 * 84.99803 * 10 9 7 12 12 C 1.50694 * 109.46720 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00776 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99694 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99880 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00044 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47166 * 90.00461 * 16 14 12 18 18 H 1.48504 * 109.47077 * 210.00325 * 16 14 12 19 19 H 1.48506 * 109.47141 * 330.00264 * 16 14 12 20 20 C 1.38110 * 120.07936 * 0.02562 * 9 7 5 21 21 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46871 * 300.00151 * 1 2 3 23 23 H 1.08998 * 109.46479 * 60.00129 * 1 2 3 24 24 H 1.08001 * 120.04079 * 359.96386 * 4 3 2 25 25 H 1.09001 * 109.46918 * 269.98003 * 6 5 4 26 26 H 1.08993 * 109.46913 * 29.98199 * 6 5 4 27 27 H 1.09005 * 109.47001 * 149.97810 * 6 5 4 28 28 H 1.09000 * 109.47451 * 89.99433 * 8 7 5 29 29 H 1.08997 * 109.47278 * 210.00161 * 8 7 5 30 30 H 1.09011 * 109.46438 * 329.99675 * 8 7 5 31 31 H 1.08995 * 109.46909 * 205.00215 * 10 9 7 32 32 H 1.08999 * 109.46787 * 325.00082 * 10 9 7 33 33 H 1.08994 * 109.46880 * 300.00274 * 11 10 9 34 34 H 1.09002 * 109.46833 * 59.99994 * 11 10 9 35 35 H 0.96999 * 120.00183 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.03734 * 179.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5095 4.0105 0.0000 6 6 0.4095 5.0407 0.0000 7 6 2.8329 4.4131 0.0005 8 6 3.1720 5.8815 -0.0052 9 6 3.8456 3.4715 0.0011 10 6 5.2858 3.9151 0.0022 11 6 5.7351 4.1851 1.4397 12 6 7.1751 4.6293 1.4407 13 1 7.7157 4.7113 0.5094 14 6 7.8023 4.9321 2.6307 15 7 7.1439 4.8327 3.7648 16 14 9.5871 5.4834 2.6320 17 1 9.6485 6.9621 2.5103 18 1 10.2338 5.0639 3.9013 19 1 10.2979 4.8623 1.4855 20 6 3.5386 2.1249 0.0005 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 0.1617 2.3526 -0.0015 25 1 0.1449 5.2896 -1.0277 26 1 -0.4642 4.6392 0.5131 27 1 0.7524 5.9384 0.5146 28 1 3.2519 6.2400 1.0211 29 1 4.1217 6.0331 -0.5180 30 1 2.3873 6.4335 -0.5228 31 1 5.9075 3.1321 -0.4318 32 1 5.3856 4.8267 -0.5869 33 1 5.1134 4.9681 1.8736 34 1 5.6352 3.2735 2.0288 35 1 7.5852 5.0454 4.6021 36 1 4.3301 1.3900 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260222959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:31 Heat of formation + Delta-G solvation = -6.375291 kcal Electronic energy + Delta-G solvation = -15768.282804 eV Core-core repulsion = 13342.330551 eV Total energy + Delta-G solvation = -2425.952254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42011 -34.45358 -33.12704 -32.46026 -29.74378 -29.14909 -27.25060 -26.15544 -24.90530 -21.75209 -20.83887 -19.70450 -16.79303 -16.20795 -15.86342 -15.51467 -14.50164 -14.11380 -13.99109 -13.69466 -13.41946 -12.93733 -12.72068 -12.64145 -12.47259 -12.34652 -12.06864 -11.84410 -11.59484 -11.27541 -11.03180 -10.88427 -10.70965 -10.40087 -10.09552 -9.74483 -9.66779 -9.08093 -8.94182 -8.33505 -8.14066 -7.14880 -5.98473 -4.01536 1.54642 1.62936 1.71203 2.50806 3.32666 3.39128 3.42444 3.97528 4.47136 4.95056 4.95991 4.98685 5.10363 5.29927 5.37125 5.46228 5.52220 5.57252 5.66547 5.70947 5.89812 5.94358 6.07059 6.09826 6.34368 6.41071 6.50703 6.60413 6.70986 6.79671 7.00342 7.14976 7.35500 7.69990 7.83643 8.01701 8.41750 9.05471 9.62436 11.12519 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.005210 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.920094 B = 5372.638638 C = 6071.987193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.131 6.131 3 C -0.086 4.086 4 C -0.146 4.146 5 C -0.073 4.073 6 C -0.112 4.112 7 C -0.084 4.084 8 C -0.116 4.116 9 C -0.038 4.038 10 C -0.082 4.082 11 C 0.032 3.968 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.100 4.100 21 H 0.103 0.897 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 -3.969 -8.313 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.110 5.890 3 C -0.198 4.198 4 C -0.170 4.170 5 C -0.075 4.075 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.172 4.172 9 C -0.040 4.040 10 C -0.119 4.119 11 C -0.005 4.005 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.123 4.123 21 H 0.122 0.878 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.134 0.866 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.006 -5.014 -8.120 16.948 hybrid contribution 0.125 1.267 0.233 1.295 sum -13.881 -3.746 -7.887 16.399 Atomic orbital electron populations 1.23597 0.95480 1.06529 1.05407 1.85404 1.05671 1.04607 1.93365 1.21503 0.96706 0.95361 1.06225 1.20783 0.97439 0.92497 1.06253 1.19559 0.94186 0.93596 1.00163 1.20782 0.96270 0.97883 1.01894 1.19684 0.91868 0.96199 1.00884 1.20874 1.02042 0.91449 1.02867 1.20143 0.97053 0.91892 0.94877 1.20909 0.88642 1.00331 1.02007 1.19045 0.95733 0.97145 0.88616 1.21245 0.96841 1.45135 0.92760 0.92616 1.25012 0.97988 0.95672 0.95648 1.69972 1.36677 1.48998 0.97663 0.86613 0.85171 0.78896 0.77440 1.20674 1.21240 1.19852 1.20638 0.93811 0.95872 1.01997 0.87831 0.89960 0.90063 0.86624 0.91497 0.92083 0.91058 0.90706 0.90621 0.92313 0.92265 0.91612 0.96237 0.96533 0.93004 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.15 101.05 0.92 -0.41 16 2 S -0.13 -1.81 22.56 -107.50 -2.43 -4.23 16 3 C -0.09 -1.40 6.11 -39.04 -0.24 -1.64 16 4 C -0.15 -2.18 9.02 -39.37 -0.35 -2.53 16 5 C -0.07 -1.11 5.88 -104.65 -0.62 -1.73 16 6 C -0.11 -1.29 9.18 36.01 0.33 -0.96 16 7 C -0.08 -1.46 5.88 -104.57 -0.62 -2.07 16 8 C -0.12 -1.82 8.56 36.01 0.31 -1.51 16 9 C -0.04 -0.72 5.13 -104.65 -0.54 -1.26 16 10 C -0.08 -1.71 4.78 -27.88 -0.13 -1.85 16 11 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 12 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.10 -1.83 9.42 -39.36 -0.37 -2.20 16 21 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.75 7.75 -51.92 -0.40 0.34 16 23 H 0.08 0.70 7.75 -51.92 -0.40 0.30 16 24 H 0.12 1.41 5.88 -52.49 -0.31 1.10 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.22 6.01 -51.93 -0.31 0.91 16 30 H 0.06 0.75 6.71 -51.92 -0.35 0.40 16 31 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 32 H 0.07 1.31 6.14 -51.93 -0.32 0.99 16 33 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -30.74 307.04 -9.28 -40.02 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.35 Total: -1.84 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -1.85 Total: -28.92 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.43 Total: -4.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.74 -9.28 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.649 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds