Wall clock time and date at job start Mon Mar 30 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35949 * 116.99674 * 2 1 4 4 C 1.38727 * 120.03067 * 359.97179 * 3 2 1 5 5 C 1.38128 * 119.96884 * 180.02562 * 4 3 2 6 6 C 1.38480 * 120.02975 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.96910 * 180.02562 * 6 5 4 8 8 C 1.38431 * 120.05646 * 359.79027 * 6 5 4 9 9 C 1.50706 * 119.98305 * 180.25248 * 8 6 5 10 10 C 1.38171 * 120.03388 * 0.46636 * 8 6 5 11 11 C 1.50699 * 120.01510 * 179.78964 * 10 8 6 12 12 C 1.50699 * 115.56213 * 297.92553 * 11 10 8 13 13 H 1.07996 * 120.00420 * 140.23084 * 12 11 10 14 14 C 1.37881 * 119.99978 * 320.22089 * 12 11 10 15 15 N 1.31513 * 120.00370 * 168.26649 * 14 12 11 16 16 Si 1.86805 * 119.99749 * 348.26759 * 14 12 11 17 17 H 1.48498 * 109.47190 * 84.70885 * 16 14 12 18 18 H 1.48503 * 109.46868 * 204.71298 * 16 14 12 19 19 H 1.48503 * 109.47181 * 324.70830 * 16 14 12 20 20 C 1.53003 * 117.49881 * 152.23272 * 11 10 8 21 21 C 1.53002 * 117.49937 * 83.60974 * 11 10 8 22 22 H 1.09002 * 109.46794 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47249 * 300.00215 * 1 2 3 24 24 H 1.08999 * 109.47170 * 60.00567 * 1 2 3 25 25 H 1.07998 * 120.01532 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.98446 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47376 * 269.13117 * 9 8 6 28 28 H 1.09004 * 109.47093 * 29.12834 * 9 8 6 29 29 H 1.08996 * 109.47570 * 149.12861 * 9 8 6 30 30 H 0.96994 * 120.00206 * 180.02562 * 15 14 12 31 31 H 1.08997 * 117.49925 * 359.97438 * 20 11 10 32 32 H 1.08999 * 117.49774 * 145.02345 * 20 11 10 33 33 H 1.08998 * 117.50303 * 214.97596 * 21 11 10 34 34 H 1.08997 * 117.49667 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2912 2.3752 -0.0006 5 6 1.9195 3.6053 -0.0011 6 6 3.3025 3.6770 -0.0005 7 9 3.9158 4.8808 -0.0005 8 6 4.0570 2.5164 0.0050 9 6 5.5619 2.5965 0.0114 10 6 3.4310 1.2846 0.0002 11 6 4.2529 0.0215 0.0014 12 6 5.1462 -0.1743 -1.1964 13 1 6.1389 -0.5799 -1.0692 14 6 4.6960 0.1644 -2.4549 15 7 5.5386 0.2147 -3.4633 16 14 2.8890 0.5518 -2.7274 17 1 2.6338 1.9778 -2.4011 18 1 2.5372 0.2983 -4.1478 19 1 2.0595 -0.3129 -1.8502 20 6 3.6289 -1.2267 0.6288 21 6 4.7591 -0.4907 1.3513 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.2126 2.3195 -0.0006 26 1 1.3320 4.5115 -0.0012 27 1 5.9300 2.5983 -1.0146 28 1 5.8748 3.5132 0.5112 29 1 5.9693 1.7361 0.5421 30 1 5.2220 0.4532 -4.3485 31 1 2.6241 -1.1341 1.0411 32 1 3.8645 -2.1894 0.1752 33 1 5.7381 -0.9693 1.3731 34 1 4.4973 0.0857 2.2386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260233082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:13 Heat of formation + Delta-G solvation = -17.972405 kcal Electronic energy + Delta-G solvation = -19371.137288 eV Core-core repulsion = 16378.468970 eV Total energy + Delta-G solvation = -2992.668318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.33115 -40.16427 -37.27527 -35.93831 -32.18647 -31.77259 -29.56654 -27.06785 -26.20607 -25.73594 -22.52258 -21.43218 -20.77758 -19.27322 -17.40511 -17.02237 -16.46184 -16.12176 -15.80982 -15.03689 -14.44166 -14.35580 -13.72444 -13.36054 -13.02083 -12.80184 -12.61882 -12.47845 -12.13952 -11.78537 -11.45231 -11.19570 -11.14139 -10.91145 -10.43418 -10.34561 -10.13719 -9.77445 -9.46172 -9.15036 -8.98457 -8.27493 -8.02890 -7.45049 -6.10594 -4.06506 1.67536 1.71974 3.35451 3.47472 3.54294 3.77527 4.03536 4.53941 4.76755 4.86742 5.04115 5.25301 5.30734 5.35649 5.49884 5.53593 5.65005 5.72776 5.95396 6.11333 6.17912 6.31148 6.39026 6.48769 6.54061 6.58459 6.71950 6.81856 6.95682 7.04879 7.16742 7.28469 7.37383 7.74881 7.82941 8.49407 8.90620 9.54574 10.98742 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.014385 C = 0.011674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.273533 B = 1945.956240 C = 2397.966965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.284 6.284 3 C 0.110 3.890 4 C -0.197 4.197 5 C -0.128 4.128 6 C 0.050 3.950 7 F -0.146 7.146 8 C -0.054 4.054 9 C -0.101 4.101 10 C -0.035 4.035 11 C 0.047 3.953 12 C -0.479 4.479 13 H 0.079 0.921 14 C 0.090 3.910 15 N -0.891 5.891 16 Si 0.825 3.175 17 H -0.271 1.271 18 H -0.302 1.302 19 H -0.214 1.214 20 C -0.190 4.190 21 C -0.185 4.185 22 H 0.095 0.905 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 3.329 7.828 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.197 6.197 3 C 0.065 3.935 4 C -0.216 4.216 5 C -0.147 4.147 6 C 0.031 3.969 7 F -0.125 7.125 8 C -0.055 4.055 9 C -0.157 4.157 10 C -0.036 4.036 11 C 0.046 3.954 12 C -0.515 4.515 13 H 0.097 0.903 14 C -0.114 4.114 15 N -0.527 5.527 16 Si 0.653 3.347 17 H -0.196 1.196 18 H -0.230 1.230 19 H -0.137 1.137 20 C -0.228 4.228 21 C -0.222 4.222 22 H 0.114 0.886 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.872 3.211 7.626 12.132 hybrid contribution -1.240 0.713 -0.517 1.521 sum -10.112 3.924 7.109 12.969 Atomic orbital electron populations 1.22989 0.80781 1.03442 1.00605 1.86633 1.19404 1.25570 1.88138 1.18781 0.92130 0.84474 0.98162 1.20878 0.99624 0.91625 1.09431 1.20651 0.92543 0.98139 1.03367 1.17417 0.90567 0.80256 1.08663 1.91408 1.83499 1.43021 1.94559 1.19610 0.97607 0.90114 0.98192 1.20675 0.89368 1.01727 1.03976 1.18818 0.89419 0.95360 1.00001 1.17881 0.96818 0.87183 0.93548 1.20230 1.00392 1.43078 0.87842 0.90265 1.24835 0.97046 0.93666 0.95843 1.69908 1.34447 1.47297 1.01051 0.87720 0.88404 0.81137 0.77472 1.19610 1.22957 1.13740 1.23293 0.95867 0.98265 1.05348 1.22844 0.98685 1.05364 0.95299 0.88618 0.93182 0.93334 0.85304 0.85401 0.89593 0.93121 0.89680 0.92608 0.89387 0.89924 0.89752 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.28 -5.35 4.49 -19.58 -0.09 -5.44 16 3 C 0.11 2.20 3.72 -39.24 -0.15 2.06 16 4 C -0.20 -3.45 8.72 -39.44 -0.34 -3.80 16 5 C -0.13 -2.26 10.02 -39.53 -0.40 -2.66 16 6 C 0.05 1.00 7.24 -39.42 -0.29 0.71 16 7 F -0.15 -2.79 16.45 2.25 0.04 -2.75 16 8 C -0.05 -1.17 5.60 -104.57 -0.59 -1.75 16 9 C -0.10 -2.08 8.56 36.01 0.31 -1.77 16 10 C -0.03 -0.77 2.67 -104.48 -0.28 -1.05 16 11 C 0.05 1.08 0.43 -156.81 -0.07 1.01 16 12 C -0.48 -12.99 8.19 -34.44 -0.28 -13.27 16 13 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.09 2.55 5.42 -17.82 -0.10 2.45 16 15 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 16 Si 0.83 21.05 23.42 -169.99 -3.98 17.07 16 17 H -0.27 -6.94 6.33 56.52 0.36 -6.58 16 18 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 19 H -0.21 -5.10 4.52 56.52 0.26 -4.85 16 20 C -0.19 -4.01 8.92 -26.73 -0.24 -4.25 16 21 C -0.18 -3.74 9.29 -26.73 -0.25 -3.99 16 22 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 25 H 0.13 1.80 6.30 -52.49 -0.33 1.47 16 26 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 28 H 0.05 0.90 7.61 -51.93 -0.40 0.51 16 29 H 0.08 1.75 6.35 -51.93 -0.33 1.42 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.09 1.75 5.74 -51.93 -0.30 1.45 16 32 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -30.42 271.30 -5.27 -35.69 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.43 Total: 2.50 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -1.67 Total: -25.08 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.09 Total: -5.44 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.98 Total: 17.07 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.42 -5.27 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.719 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds