Wall clock time and date at job start Mon Mar 30 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.46997 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48507 * 109.47103 * 149.99687 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 C 1.50697 * 109.47576 * 179.97438 * 9 7 2 12 12 C 1.38168 * 120.02628 * 300.00037 * 11 9 7 13 13 C 1.38237 * 120.05839 * 179.97438 * 12 11 9 14 14 C 1.50699 * 119.94968 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47188 * 89.99886 * 14 13 12 16 16 C 1.38293 * 120.10905 * 359.97438 * 13 12 11 17 17 C 1.38119 * 120.05392 * 359.97268 * 16 13 12 18 18 C 1.38709 * 120.02923 * 119.71890 * 11 9 7 19 19 O 1.35896 * 120.05566 * 0.02562 * 18 11 9 20 20 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 21 21 C 1.52997 * 117.50041 * 248.75159 * 20 9 7 22 22 C 1.52995 * 117.50008 * 180.08956 * 20 9 7 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.97099 * 359.97438 * 12 11 9 25 25 H 1.08993 * 109.47339 * 210.00250 * 14 13 12 26 26 H 1.09006 * 109.46813 * 330.00143 * 14 13 12 27 27 H 1.08002 * 119.97065 * 180.02562 * 16 13 12 28 28 H 1.08007 * 120.02803 * 180.02562 * 17 16 13 29 29 H 0.96695 * 114.00783 * 89.99552 * 19 18 11 30 30 H 1.09006 * 115.54585 * 34.41990 * 20 9 7 31 31 H 1.09005 * 117.49810 * 359.97438 * 21 20 9 32 32 H 1.08998 * 117.49639 * 145.01797 * 21 20 9 33 33 H 1.08999 * 117.50112 * 214.97955 * 22 20 9 34 34 H 1.09000 * 117.49852 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 2.2304 -3.6446 0.0005 12 6 3.1343 -3.7814 -1.0354 13 6 4.0333 -4.8316 -1.0359 14 6 5.0177 -4.9789 -2.1673 15 9 6.1906 -4.2815 -1.8587 16 6 4.0307 -5.7474 0.0004 17 6 3.1298 -5.6144 1.0389 18 6 2.2290 -4.5591 1.0435 19 8 1.3444 -4.4237 2.0662 20 6 0.3719 -2.5805 -1.2490 21 6 -1.1439 -2.5129 -1.0518 22 6 -0.4796 -3.8382 -1.4330 23 1 -0.4850 0.8400 -0.0004 24 1 3.1386 -3.0673 -1.8457 25 1 5.2497 -6.0339 -2.3121 26 1 4.5838 -4.5735 -3.0815 27 1 4.7343 -6.5668 -0.0020 28 1 3.1284 -6.3296 1.8482 29 1 0.5055 -4.8831 1.9242 30 1 0.7841 -2.1162 -2.1449 31 1 -1.5147 -2.4108 -0.0319 32 1 -1.7288 -2.0044 -1.8183 33 1 -0.6280 -4.2013 -2.4500 34 1 -0.4137 -4.6076 -0.6637 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:13 Heat of formation + Delta-G solvation = -55.138503 kcal Electronic energy + Delta-G solvation = -18348.673624 eV Core-core repulsion = 15354.393663 eV Total energy + Delta-G solvation = -2994.279961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.37042 -39.46280 -36.46128 -36.25809 -32.78434 -31.26287 -30.72498 -27.23119 -25.50574 -23.60353 -21.96369 -21.33576 -20.55523 -18.94103 -17.79238 -16.54754 -15.92497 -15.71345 -15.60410 -14.81217 -14.59974 -14.50534 -14.15368 -13.49789 -13.07186 -12.79447 -12.49201 -12.00704 -11.66247 -11.54594 -10.95075 -10.88829 -10.79412 -10.68089 -10.53138 -10.21776 -10.10528 -9.82929 -9.58258 -8.79459 -8.75837 -8.31023 -8.25422 -7.82894 -5.99721 -4.05944 1.66854 1.95711 3.31070 3.38143 3.43393 4.12165 4.45704 4.74679 4.90107 4.95692 5.03152 5.10336 5.29767 5.47806 5.52075 5.84665 5.90124 5.93176 6.10139 6.16090 6.32865 6.38925 6.43091 6.63162 6.74227 6.87577 6.98299 7.05489 7.11081 7.23273 7.39420 7.49355 7.80950 7.97478 8.21543 8.35070 8.95807 9.57889 11.06139 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.008650 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.753570 B = 3236.177040 C = 3924.501277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.105 3.895 10 H 0.048 0.952 11 C -0.050 4.050 12 C -0.070 4.070 13 C -0.155 4.155 14 C 0.112 3.888 15 F -0.216 7.216 16 C -0.110 4.110 17 C -0.153 4.153 18 C 0.101 3.899 19 O -0.491 6.491 20 C -0.082 4.082 21 C -0.135 4.135 22 C -0.227 4.227 23 H 0.259 0.741 24 H 0.127 0.873 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.380 0.620 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -10.892 -3.016 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.087 3.913 10 H 0.066 0.934 11 C -0.050 4.050 12 C -0.089 4.089 13 C -0.155 4.155 14 C 0.057 3.943 15 F -0.197 7.197 16 C -0.129 4.129 17 C -0.172 4.172 18 C 0.056 3.944 19 O -0.300 6.300 20 C -0.101 4.101 21 C -0.172 4.172 22 C -0.264 4.264 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.235 0.765 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.030 -10.406 -2.747 11.181 hybrid contribution 0.055 0.744 -0.148 0.760 sum 3.085 -9.662 -2.895 10.548 Atomic orbital electron populations 1.70018 1.05614 1.26277 1.49228 1.24928 0.94869 0.98799 0.94864 0.86649 0.80058 0.83609 0.78057 1.20737 1.21275 1.19895 1.20976 0.92721 0.89433 1.51987 0.92510 1.17476 0.90832 0.89489 0.93489 0.93433 1.20873 0.96977 0.96030 0.91144 1.20863 0.93364 0.95686 0.98939 1.20152 0.99416 0.98163 0.97815 1.20723 0.80841 0.96223 0.96510 1.92793 1.50250 1.81757 1.94861 1.20600 0.99036 0.99219 0.94006 1.21233 0.98378 0.98445 0.99139 1.18479 0.93175 0.94331 0.88390 1.84847 1.28244 1.76451 1.40434 1.22236 0.92454 0.95301 1.00067 1.22446 0.97036 0.96588 1.01141 1.23045 1.10841 0.92430 1.00110 0.93150 0.85464 0.90609 0.90180 0.86582 0.86249 0.76495 0.89955 0.89534 0.91112 0.91022 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 11.43 55.43 0.63 -23.29 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.81 8.22 -34.44 -0.28 -14.09 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.11 2.52 2.07 -92.92 -0.19 2.33 16 10 H 0.05 1.25 6.75 -51.93 -0.35 0.90 16 11 C -0.05 -1.04 4.40 -104.48 -0.46 -1.50 16 12 C -0.07 -1.35 8.47 -39.61 -0.34 -1.69 16 13 C -0.16 -2.54 5.60 -104.60 -0.59 -3.13 16 14 C 0.11 1.49 7.67 36.01 0.28 1.77 16 15 F -0.22 -3.48 17.34 2.25 0.04 -3.45 16 16 C -0.11 -1.70 9.69 -39.60 -0.38 -2.08 16 17 C -0.15 -2.51 9.99 -39.44 -0.39 -2.91 16 18 C 0.10 1.93 6.68 -39.22 -0.26 1.66 16 19 O -0.49 -9.05 12.27 -19.41 -0.24 -9.29 16 20 C -0.08 -1.81 3.87 -90.62 -0.35 -2.16 16 21 C -0.13 -2.84 9.04 -26.70 -0.24 -3.08 16 22 C -0.23 -4.25 9.87 -26.70 -0.26 -4.51 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.13 2.47 8.05 -52.48 -0.42 2.05 16 25 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.38 5.20 9.06 45.56 0.41 5.61 16 30 H 0.08 1.93 8.11 -51.93 -0.42 1.51 16 31 H 0.09 1.92 8.05 -51.93 -0.42 1.50 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -29.43 295.42 -7.39 -36.82 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.69 Total: 6.15 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -3.57 Total: -27.64 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.63 Total: -23.29 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.24 Total: -9.29 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.43 -7.39 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.319 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds