Wall clock time and date at job start Mon Mar 30 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.46997 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48507 * 109.47103 * 149.99687 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 C 1.50697 * 109.47576 * 179.97438 * 9 7 2 12 12 C 1.38168 * 120.02628 * 300.00037 * 11 9 7 13 13 C 1.38237 * 120.05839 * 179.97438 * 12 11 9 14 14 C 1.50699 * 119.94968 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47188 * 89.99886 * 14 13 12 16 16 C 1.38293 * 120.10905 * 359.97438 * 13 12 11 17 17 C 1.38119 * 120.05392 * 359.97268 * 16 13 12 18 18 C 1.38709 * 120.02923 * 119.71890 * 11 9 7 19 19 O 1.35896 * 120.05566 * 0.02562 * 18 11 9 20 20 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 21 21 C 1.52997 * 117.50041 * 248.75159 * 20 9 7 22 22 C 1.52995 * 117.50008 * 180.08956 * 20 9 7 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.97099 * 359.97438 * 12 11 9 25 25 H 1.08993 * 109.47339 * 210.00250 * 14 13 12 26 26 H 1.09006 * 109.46813 * 330.00143 * 14 13 12 27 27 H 1.08002 * 119.97065 * 180.02562 * 16 13 12 28 28 H 1.08007 * 120.02803 * 180.02562 * 17 16 13 29 29 H 0.96695 * 114.00783 * 89.99552 * 19 18 11 30 30 H 1.09006 * 115.54585 * 34.41990 * 20 9 7 31 31 H 1.09005 * 117.49810 * 359.97438 * 21 20 9 32 32 H 1.08998 * 117.49639 * 145.01797 * 21 20 9 33 33 H 1.08999 * 117.50112 * 214.97955 * 22 20 9 34 34 H 1.09000 * 117.49852 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 2.2304 -3.6446 0.0005 12 6 3.1343 -3.7814 -1.0354 13 6 4.0333 -4.8316 -1.0359 14 6 5.0177 -4.9789 -2.1673 15 9 6.1906 -4.2815 -1.8587 16 6 4.0307 -5.7474 0.0004 17 6 3.1298 -5.6144 1.0389 18 6 2.2290 -4.5591 1.0435 19 8 1.3444 -4.4237 2.0662 20 6 0.3719 -2.5805 -1.2490 21 6 -1.1439 -2.5129 -1.0518 22 6 -0.4796 -3.8382 -1.4330 23 1 -0.4850 0.8400 -0.0004 24 1 3.1386 -3.0673 -1.8457 25 1 5.2497 -6.0339 -2.3121 26 1 4.5838 -4.5735 -3.0815 27 1 4.7343 -6.5668 -0.0020 28 1 3.1284 -6.3296 1.8482 29 1 0.5055 -4.8831 1.9242 30 1 0.7841 -2.1162 -2.1449 31 1 -1.5147 -2.4108 -0.0319 32 1 -1.7288 -2.0044 -1.8183 33 1 -0.6280 -4.2013 -2.4500 34 1 -0.4137 -4.6076 -0.6637 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:12 Heat of formation + Delta-G solvation = -71.980706 kcal Electronic energy + Delta-G solvation = -18349.403957 eV Core-core repulsion = 15354.393663 eV Total energy + Delta-G solvation = -2995.010294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.52205 -40.88005 -38.12162 -37.62097 -34.71026 -32.88880 -31.98911 -28.97287 -26.72025 -25.45258 -23.40789 -22.93902 -21.98812 -20.63348 -19.19507 -18.44249 -17.19879 -17.03735 -16.76180 -16.48810 -16.19937 -15.89709 -15.73546 -14.91599 -14.69407 -14.34479 -13.97374 -13.70248 -13.12311 -12.97251 -12.87120 -12.64284 -12.21526 -12.17098 -11.92807 -11.86080 -11.77748 -11.63551 -11.19327 -10.62884 -10.55161 -10.17259 -9.61342 -9.28283 -8.05965 -6.17902 0.32552 0.59535 1.37726 1.39989 1.49163 2.42699 2.79277 3.20357 3.36566 3.45239 3.72882 3.92971 4.08744 4.18164 4.29120 4.34542 4.47330 4.50326 4.71013 4.79783 4.83491 4.89644 5.03169 5.14424 5.24050 5.32108 5.46372 5.49737 5.53923 5.62675 5.69374 5.83771 6.05381 6.09080 6.37353 6.88660 6.95902 7.47529 8.97622 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.008650 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.753570 B = 3236.177040 C = 3924.501277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.039 0.961 9 C 0.114 3.886 10 H 0.014 0.986 11 C -0.082 4.082 12 C -0.087 4.087 13 C -0.155 4.155 14 C 0.108 3.892 15 F -0.232 7.232 16 C -0.099 4.099 17 C -0.149 4.149 18 C 0.085 3.915 19 O -0.508 6.508 20 C -0.100 4.100 21 C -0.143 4.143 22 C -0.186 4.186 23 H 0.258 0.742 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.398 0.602 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -13.081 -3.539 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.058 0.942 9 C 0.095 3.905 10 H 0.032 0.968 11 C -0.083 4.083 12 C -0.105 4.105 13 C -0.155 4.155 14 C 0.054 3.946 15 F -0.214 7.214 16 C -0.116 4.116 17 C -0.167 4.167 18 C 0.041 3.959 19 O -0.319 6.319 20 C -0.119 4.119 21 C -0.180 4.180 22 C -0.223 4.223 23 H 0.067 0.933 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.176 0.824 28 H 0.166 0.834 29 H 0.255 0.745 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.124 -12.603 -3.277 13.660 hybrid contribution -0.267 1.364 0.040 1.390 sum 3.857 -11.239 -3.238 12.316 Atomic orbital electron populations 1.70116 1.06366 1.26675 1.49793 1.25550 0.95697 1.01385 0.94877 0.85824 0.78711 0.80515 0.78178 1.20035 1.20781 1.20369 1.21250 0.92185 0.91531 1.51874 0.94239 1.17166 0.91047 0.89657 0.92614 0.96768 1.20711 0.97901 0.96397 0.93263 1.20826 0.94496 0.96838 0.98334 1.20479 0.98894 0.97027 0.99134 1.20998 0.79448 0.98565 0.95586 1.92760 1.51158 1.82474 1.94967 1.21099 0.98547 0.99455 0.92534 1.21540 0.97241 0.97760 1.00167 1.18687 0.94191 0.95068 0.87944 1.84788 1.29380 1.77262 1.40493 1.21957 0.92669 0.98525 0.98719 1.22360 0.96332 0.98987 1.00308 1.23048 1.06372 0.91130 1.01748 0.93253 0.87062 0.86372 0.88948 0.82421 0.83368 0.74518 0.91932 0.91327 0.90848 0.88540 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.31 11.43 21.45 0.25 -50.06 16 2 C 0.03 1.44 5.30 84.65 0.45 1.89 16 3 Si 0.94 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.53 -29.74 8.22 25.60 0.21 -29.53 16 8 H 0.04 2.28 7.60 -2.91 -0.02 2.26 16 9 C 0.11 5.63 2.07 -12.29 -0.03 5.61 16 10 H 0.01 0.79 6.75 -2.39 -0.02 0.77 16 11 C -0.08 -3.49 4.40 -19.77 -0.09 -3.58 16 12 C -0.09 -3.33 8.47 22.25 0.19 -3.14 16 13 C -0.15 -4.71 5.60 -19.85 -0.11 -4.82 16 14 C 0.11 2.54 7.67 71.24 0.55 3.09 16 15 F -0.23 -6.98 17.34 44.97 0.78 -6.20 16 16 C -0.10 -2.64 9.69 22.25 0.22 -2.42 16 17 C -0.15 -4.43 9.99 22.36 0.22 -4.21 16 18 C 0.09 3.21 6.68 22.51 0.15 3.36 16 19 O -0.51 -18.70 12.27 -92.38 -1.13 -19.84 16 20 C -0.10 -4.55 3.87 -10.79 -0.04 -4.59 16 21 C -0.14 -6.11 9.04 30.62 0.28 -5.83 16 22 C -0.19 -6.77 9.87 30.62 0.30 -6.47 16 23 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 24 H 0.11 4.49 8.05 -2.91 -0.02 4.47 16 25 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 26 H 0.09 1.94 8.08 -2.38 -0.02 1.92 16 27 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.40 10.79 9.06 -74.06 -0.67 10.12 16 30 H 0.06 3.05 8.11 -2.38 -0.02 3.03 16 31 H 0.07 3.16 8.05 -2.38 -0.02 3.14 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.09 2.89 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -65.54 295.42 4.65 -60.89 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.44 Total: 19.16 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 2.30 Total: -50.64 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.25 Total: -50.06 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.13 Total: -19.84 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.78 Total: -6.20 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.54 4.65 -60.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.088 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds