Wall clock time and date at job start Mon Mar 30 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99988 * 2 1 4 4 C 1.38725 * 120.02789 * 354.89313 * 3 2 1 5 5 C 1.38130 * 119.97163 * 179.72363 * 4 3 2 6 6 C 1.50696 * 119.98911 * 180.02562 * 5 4 3 7 7 C 1.38481 * 120.02688 * 0.02562 * 5 4 3 8 8 F 1.35095 * 119.97168 * 179.97438 * 7 5 4 9 9 C 1.38437 * 120.06150 * 0.02562 * 7 5 4 10 10 C 1.38170 * 120.02755 * 359.97438 * 9 7 5 11 11 C 1.50701 * 120.01401 * 180.02562 * 10 9 7 12 12 C 1.50703 * 115.54898 * 244.39427 * 11 10 9 13 13 H 1.08001 * 120.00270 * 275.56218 * 12 11 10 14 14 C 1.37876 * 120.00067 * 95.56623 * 12 11 10 15 15 N 1.31514 * 120.00065 * 175.12658 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 355.12267 * 14 12 11 17 17 H 1.48497 * 109.47176 * 94.78424 * 16 14 12 18 18 H 1.48502 * 109.47203 * 214.78592 * 16 14 12 19 19 H 1.48502 * 109.47199 * 334.78431 * 16 14 12 20 20 C 1.52992 * 117.49898 * 98.72710 * 11 10 9 21 21 C 1.52992 * 117.50051 * 30.06279 * 11 10 9 22 22 H 1.08999 * 109.47009 * 304.97707 * 1 2 3 23 23 H 1.09009 * 109.46939 * 64.97456 * 1 2 3 24 24 H 1.08992 * 109.46954 * 184.97435 * 1 2 3 25 25 H 1.08004 * 120.02121 * 359.74922 * 4 3 2 26 26 H 1.09002 * 109.47257 * 90.00349 * 6 5 4 27 27 H 1.09000 * 109.47151 * 209.99945 * 6 5 4 28 28 H 1.09002 * 109.46822 * 329.99833 * 6 5 4 29 29 H 1.07997 * 119.98662 * 180.02562 * 9 7 5 30 30 H 0.97003 * 120.00262 * 179.97438 * 15 14 12 31 31 H 1.09003 * 117.49923 * 359.97438 * 20 11 10 32 32 H 1.09003 * 117.50542 * 145.02068 * 20 11 10 33 33 H 1.09001 * 117.50301 * 214.98075 * 21 11 10 34 34 H 1.09008 * 117.49838 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2955 2.3730 -0.1069 5 6 1.9233 3.6034 -0.1010 6 6 1.1081 4.8655 -0.2166 7 6 3.3016 3.6775 0.0110 8 9 3.9145 4.8814 0.0161 9 6 4.0521 2.5190 0.1167 10 6 3.4266 1.2870 0.1110 11 6 4.2438 0.0261 0.2267 12 6 4.2066 -0.8848 -0.9733 13 1 3.4025 -1.5970 -1.0860 14 6 5.1993 -0.8092 -1.9272 15 7 5.2203 -1.6671 -2.9238 16 14 6.5142 0.5118 -1.8042 17 1 7.7063 -0.0394 -1.1112 18 1 6.8966 0.9581 -3.1679 19 1 5.9849 1.6670 -1.0355 20 6 4.3434 -0.6270 1.6066 21 6 5.5525 0.1023 1.0155 22 1 -0.3633 0.5891 0.8420 23 1 -0.3633 0.4348 -0.9313 24 1 -0.3633 -1.0237 0.0891 25 1 0.2205 2.3155 -0.1943 26 1 0.8264 5.2085 0.7790 27 1 1.6991 5.6356 -0.7124 28 1 0.2094 4.6654 -0.7999 29 1 5.1269 2.5782 0.2044 30 1 5.9184 -1.6137 -3.5951 31 1 3.8182 -0.1445 2.4309 32 1 4.3826 -1.7156 1.6466 33 1 6.3865 -0.5067 0.6668 34 1 5.8226 1.0646 1.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:26 Heat of formation + Delta-G solvation = -31.641714 kcal Electronic energy + Delta-G solvation = -18669.250595 eV Core-core repulsion = 15675.989531 eV Total energy + Delta-G solvation = -2993.261064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.39871 -39.81366 -37.24554 -36.25051 -32.22251 -31.81033 -29.31011 -27.60098 -26.34396 -25.42551 -22.60909 -21.53170 -21.14480 -19.39517 -17.23092 -16.93555 -16.47150 -15.74517 -15.42719 -14.96560 -14.79287 -14.19810 -14.01009 -13.81882 -13.16748 -12.77993 -12.71966 -12.63145 -12.40659 -11.99763 -11.82086 -11.33808 -11.12559 -11.00522 -10.61601 -10.36728 -10.27700 -10.01973 -9.54642 -9.36846 -8.56047 -8.53923 -8.20518 -7.35918 -6.08462 -4.09758 1.66714 1.75196 3.31769 3.43253 3.45235 3.82700 4.05261 4.45760 4.70705 4.87437 4.94705 5.19970 5.27045 5.34350 5.39558 5.46556 5.57971 5.68001 5.76498 5.84791 5.93002 6.06799 6.10950 6.15989 6.33434 6.46033 6.49417 6.63360 6.73847 6.94023 7.08253 7.14209 7.27887 7.73400 7.97848 8.54374 8.99251 9.54408 11.02594 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.010313 C = 0.008245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.584410 B = 2714.300647 C = 3395.341420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.283 6.283 3 C 0.139 3.861 4 C -0.192 4.192 5 C -0.106 4.106 6 C -0.106 4.106 7 C 0.050 3.950 8 F -0.149 7.149 9 C -0.123 4.123 10 C -0.022 4.022 11 C 0.044 3.956 12 C -0.470 4.470 13 H 0.085 0.915 14 C 0.076 3.924 15 N -0.896 5.896 16 Si 0.871 3.129 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.245 1.245 20 C -0.166 4.166 21 C -0.204 4.204 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 8.746 6.950 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.093 3.907 4 C -0.211 4.211 5 C -0.107 4.107 6 C -0.163 4.163 7 C 0.031 3.969 8 F -0.128 7.128 9 C -0.142 4.142 10 C -0.024 4.024 11 C 0.043 3.957 12 C -0.507 4.507 13 H 0.103 0.897 14 C -0.126 4.126 15 N -0.533 5.533 16 Si 0.699 3.301 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.169 1.169 20 C -0.203 4.203 21 C -0.241 4.241 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.147 0.853 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.644 8.523 6.770 13.301 hybrid contribution 0.685 1.014 -0.238 1.247 sum -6.959 9.538 6.532 13.493 Atomic orbital electron populations 1.23005 0.80182 1.03404 1.00461 1.86362 1.19438 1.25757 1.87941 1.18761 0.91705 0.84042 0.96227 1.20832 0.99699 0.91063 1.09477 1.19432 0.91937 0.95760 1.03546 1.20628 0.99150 0.94476 1.02015 1.17354 0.90287 0.80302 1.08978 1.91397 1.83405 1.43359 1.94651 1.21062 1.00759 0.90101 1.02264 1.19078 0.90570 0.94655 0.98065 1.17979 0.93126 0.91604 0.92944 1.20217 1.10570 1.17123 1.02797 0.89745 1.25014 0.97542 0.95236 0.94826 1.69891 1.34230 1.35707 1.13454 0.87038 0.82080 0.83986 0.76991 1.20681 1.22388 1.16941 1.22855 1.01313 0.99252 0.96918 1.23041 0.93339 1.01022 1.06727 0.93444 0.93222 0.88645 0.85257 0.91400 0.91531 0.91506 0.84177 0.92597 0.91082 0.89167 0.89157 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.82 101.05 0.99 1.33 16 2 O -0.28 -5.53 9.56 -19.59 -0.19 -5.72 16 3 C 0.14 2.75 6.59 -39.24 -0.26 2.49 16 4 C -0.19 -3.19 8.68 -39.44 -0.34 -3.53 16 5 C -0.11 -1.75 5.88 -104.57 -0.62 -2.36 16 6 C -0.11 -1.33 9.83 36.00 0.35 -0.98 16 7 C 0.05 0.93 7.24 -39.42 -0.29 0.64 16 8 F -0.15 -2.67 16.47 2.25 0.04 -2.64 16 9 C -0.12 -2.51 8.21 -39.53 -0.32 -2.84 16 10 C -0.02 -0.49 5.09 -104.48 -0.53 -1.02 16 11 C 0.04 1.04 0.69 -156.82 -0.11 0.93 16 12 C -0.47 -13.06 8.97 -34.44 -0.31 -13.37 16 13 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 15 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.87 21.55 24.84 -169.99 -4.22 17.33 16 17 H -0.28 -6.80 7.06 56.52 0.40 -6.40 16 18 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.25 -5.62 3.62 56.52 0.20 -5.42 16 20 C -0.17 -3.44 9.94 -26.70 -0.27 -3.70 16 21 C -0.20 -4.36 6.78 -26.70 -0.18 -4.54 16 22 H 0.05 0.54 7.61 -51.93 -0.39 0.14 16 23 H 0.05 0.61 7.73 -51.92 -0.40 0.21 16 24 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.13 1.73 6.33 -52.48 -0.33 1.40 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.83 7.64 -51.93 -0.40 0.43 16 28 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.14 2.83 5.20 -52.49 -0.27 2.56 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.09 2.01 6.53 -51.93 -0.34 1.68 16 34 H 0.07 1.45 7.07 -51.92 -0.37 1.08 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -30.79 280.93 -5.71 -36.50 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.37 Total: 1.62 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -1.97 Total: -24.85 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.19 Total: -5.72 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.22 Total: 17.33 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.79 -5.71 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.861 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds