Wall clock time and date at job start Mon Mar 30 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99988 * 2 1 4 4 C 1.38725 * 120.02789 * 354.89313 * 3 2 1 5 5 C 1.38130 * 119.97163 * 179.72363 * 4 3 2 6 6 C 1.50696 * 119.98911 * 180.02562 * 5 4 3 7 7 C 1.38481 * 120.02688 * 0.02562 * 5 4 3 8 8 F 1.35095 * 119.97168 * 179.97438 * 7 5 4 9 9 C 1.38437 * 120.06150 * 0.02562 * 7 5 4 10 10 C 1.38170 * 120.02755 * 359.97438 * 9 7 5 11 11 C 1.50701 * 120.01401 * 180.02562 * 10 9 7 12 12 C 1.50703 * 115.54898 * 244.39427 * 11 10 9 13 13 H 1.08001 * 120.00270 * 275.56218 * 12 11 10 14 14 C 1.37876 * 120.00067 * 95.56623 * 12 11 10 15 15 N 1.31514 * 120.00065 * 175.12658 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 355.12267 * 14 12 11 17 17 H 1.48497 * 109.47176 * 94.78424 * 16 14 12 18 18 H 1.48502 * 109.47203 * 214.78592 * 16 14 12 19 19 H 1.48502 * 109.47199 * 334.78431 * 16 14 12 20 20 C 1.52992 * 117.49898 * 98.72710 * 11 10 9 21 21 C 1.52992 * 117.50051 * 30.06279 * 11 10 9 22 22 H 1.08999 * 109.47009 * 304.97707 * 1 2 3 23 23 H 1.09009 * 109.46939 * 64.97456 * 1 2 3 24 24 H 1.08992 * 109.46954 * 184.97435 * 1 2 3 25 25 H 1.08004 * 120.02121 * 359.74922 * 4 3 2 26 26 H 1.09002 * 109.47257 * 90.00349 * 6 5 4 27 27 H 1.09000 * 109.47151 * 209.99945 * 6 5 4 28 28 H 1.09002 * 109.46822 * 329.99833 * 6 5 4 29 29 H 1.07997 * 119.98662 * 180.02562 * 9 7 5 30 30 H 0.97003 * 120.00262 * 179.97438 * 15 14 12 31 31 H 1.09003 * 117.49923 * 359.97438 * 20 11 10 32 32 H 1.09003 * 117.50542 * 145.02068 * 20 11 10 33 33 H 1.09001 * 117.50301 * 214.98075 * 21 11 10 34 34 H 1.09008 * 117.49838 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2955 2.3730 -0.1069 5 6 1.9233 3.6034 -0.1010 6 6 1.1081 4.8655 -0.2166 7 6 3.3016 3.6775 0.0110 8 9 3.9145 4.8814 0.0161 9 6 4.0521 2.5190 0.1167 10 6 3.4266 1.2870 0.1110 11 6 4.2438 0.0261 0.2267 12 6 4.2066 -0.8848 -0.9733 13 1 3.4025 -1.5970 -1.0860 14 6 5.1993 -0.8092 -1.9272 15 7 5.2203 -1.6671 -2.9238 16 14 6.5142 0.5118 -1.8042 17 1 7.7063 -0.0394 -1.1112 18 1 6.8966 0.9581 -3.1679 19 1 5.9849 1.6670 -1.0355 20 6 4.3434 -0.6270 1.6066 21 6 5.5525 0.1023 1.0155 22 1 -0.3633 0.5891 0.8420 23 1 -0.3633 0.4348 -0.9313 24 1 -0.3633 -1.0237 0.0891 25 1 0.2205 2.3155 -0.1943 26 1 0.8264 5.2085 0.7790 27 1 1.6991 5.6356 -0.7124 28 1 0.2094 4.6654 -0.7999 29 1 5.1269 2.5782 0.2044 30 1 5.9184 -1.6137 -3.5951 31 1 3.8182 -0.1445 2.4309 32 1 4.3826 -1.7156 1.6466 33 1 6.3865 -0.5067 0.6668 34 1 5.8226 1.0646 1.4505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:26 Heat of formation + Delta-G solvation = -50.386024 kcal Electronic energy + Delta-G solvation = -18670.063409 eV Core-core repulsion = 15675.989531 eV Total energy + Delta-G solvation = -2994.073878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.77723 -41.23258 -38.76446 -37.74778 -34.25601 -33.25464 -30.67656 -28.81192 -27.91525 -27.11656 -24.12601 -23.00668 -22.66171 -21.09079 -18.94886 -18.36331 -17.85317 -17.47728 -16.89462 -16.60321 -16.25306 -15.69716 -15.35522 -15.27909 -14.72985 -14.44224 -14.16166 -13.87982 -13.85329 -13.20769 -13.07262 -13.01479 -12.79482 -12.49505 -12.21877 -12.07077 -11.76668 -11.58805 -11.41621 -11.09275 -10.65624 -10.35748 -9.65446 -8.79357 -8.27625 -6.32225 0.26414 0.33431 1.33538 1.39400 1.50491 2.38122 2.57015 2.62479 3.07746 3.17058 3.40025 3.71433 3.88680 4.02368 4.19295 4.35119 4.40289 4.46684 4.48101 4.63891 4.69659 4.76415 4.79190 4.82067 4.83692 4.95227 5.07890 5.19978 5.32985 5.38282 5.46243 5.52186 5.72135 5.88723 6.37217 6.66209 6.75876 7.35413 8.87327 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.010313 C = 0.008245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.584410 B = 2714.300647 C = 3395.341420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.183 4.183 5 C -0.093 4.093 6 C -0.106 4.106 7 C 0.037 3.963 8 F -0.147 7.147 9 C -0.132 4.132 10 C -0.056 4.056 11 C 0.025 3.975 12 C -0.464 4.464 13 H 0.037 0.963 14 C 0.019 3.981 15 N -0.949 5.949 16 Si 0.925 3.075 17 H -0.271 1.271 18 H -0.306 1.306 19 H -0.218 1.218 20 C -0.153 4.153 21 C -0.197 4.197 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.166 0.834 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 11.498 8.391 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.201 4.201 5 C -0.094 4.094 6 C -0.162 4.162 7 C 0.017 3.983 8 F -0.125 7.125 9 C -0.151 4.151 10 C -0.057 4.057 11 C 0.024 3.976 12 C -0.502 4.502 13 H 0.056 0.944 14 C -0.178 4.178 15 N -0.589 5.589 16 Si 0.751 3.249 17 H -0.197 1.197 18 H -0.234 1.234 19 H -0.141 1.141 20 C -0.190 4.190 21 C -0.234 4.234 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.183 0.817 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.975 11.287 8.245 16.611 hybrid contribution 0.901 0.119 -0.644 1.114 sum -8.074 11.406 7.602 15.908 Atomic orbital electron populations 1.23341 0.77336 1.05082 1.02192 1.86310 1.22598 1.26368 1.87994 1.19001 0.91618 0.85181 0.96294 1.21180 1.01306 0.89845 1.07778 1.19931 0.91483 0.97422 1.00592 1.20760 0.99387 0.92301 1.03782 1.17456 0.91199 0.79916 1.09698 1.91402 1.83518 1.42926 1.94692 1.21034 1.00762 0.90456 1.02800 1.18918 0.91538 0.93982 1.01272 1.17779 0.95342 0.92444 0.92021 1.20304 1.08619 1.16874 1.04363 0.94431 1.25805 1.00058 0.97354 0.94541 1.70039 1.35687 1.38191 1.14968 0.86164 0.79621 0.82311 0.76775 1.19651 1.23437 1.14053 1.22848 1.00918 0.98918 0.96350 1.23060 0.92361 1.02049 1.05926 0.90725 0.92054 0.87444 0.81661 0.89237 0.91412 0.89124 0.84540 0.92766 0.88560 0.90060 0.90448 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 9.82 113.37 1.11 1.48 16 2 O -0.32 -12.32 9.56 -93.02 -0.89 -13.21 16 3 C 0.13 4.78 6.59 22.49 0.15 4.93 16 4 C -0.18 -5.44 8.68 22.36 0.19 -5.25 16 5 C -0.09 -2.73 5.88 -19.83 -0.12 -2.85 16 6 C -0.11 -2.14 9.83 71.23 0.70 -1.44 16 7 C 0.04 1.26 7.24 22.38 0.16 1.42 16 8 F -0.15 -4.84 16.47 44.97 0.74 -4.10 16 9 C -0.13 -5.14 8.21 22.30 0.18 -4.95 16 10 C -0.06 -2.37 5.09 -19.77 -0.10 -2.47 16 11 C 0.02 1.16 0.69 -53.68 -0.04 1.13 16 12 C -0.46 -26.75 8.97 25.60 0.23 -26.52 16 13 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 14 C 0.02 1.15 5.46 84.65 0.46 1.61 16 15 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 16 Si 0.93 45.08 24.84 68.60 1.70 46.79 16 17 H -0.27 -12.65 7.06 99.48 0.70 -11.95 16 18 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 19 H -0.22 -9.54 3.62 99.48 0.36 -9.18 16 20 C -0.15 -6.24 9.94 30.62 0.30 -5.93 16 21 C -0.20 -8.17 6.78 30.62 0.21 -7.96 16 22 H 0.07 1.43 7.61 -2.39 -0.02 1.41 16 23 H 0.06 1.36 7.73 -2.38 -0.02 1.34 16 24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.17 3.62 6.33 -2.91 -0.02 3.60 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.39 7.64 -2.39 -0.02 1.38 16 28 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.14 5.24 5.20 -2.91 -0.02 5.22 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 3.39 6.53 -2.39 -0.02 3.38 16 34 H 0.10 3.65 7.07 -2.38 -0.02 3.63 16 Total: -1.00 -69.76 280.93 6.06 -63.69 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.76 Total: 13.69 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.45 Total: -46.80 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.30 Total: -60.06 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.89 Total: -13.21 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.74 Total: -4.10 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.70 Total: 46.79 kcal Total: -69.76 6.06 -63.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.307 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds