Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 119.98549 * 2 1 4 4 C 1.38688 * 119.96952 * 180.02562 * 3 2 1 5 5 O 1.35946 * 120.02885 * 180.02562 * 4 3 2 6 6 C 1.38729 * 119.93954 * 359.72768 * 4 3 2 7 7 C 1.38126 * 119.96927 * 0.56924 * 6 4 3 8 8 C 1.50697 * 119.98730 * 179.70705 * 7 6 4 9 9 H 1.09000 * 109.47374 * 179.72372 * 8 7 6 10 10 C 1.50699 * 109.46956 * 299.72577 * 8 7 6 11 11 H 1.08003 * 120.00271 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 8 7 13 13 N 1.31509 * 119.99895 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00268 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46809 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46948 * 120.00386 * 14 12 10 17 17 H 1.48497 * 109.47378 * 240.00673 * 14 12 10 18 18 C 1.53006 * 109.47239 * 59.72234 * 8 7 6 19 19 C 1.53001 * 117.49866 * 128.62372 * 18 8 7 20 20 C 1.53000 * 117.49497 * 59.99964 * 18 8 7 21 21 C 1.38431 * 119.98701 * 180.02562 * 2 1 3 22 22 F 1.35102 * 119.96822 * 359.97056 * 21 2 1 23 23 H 1.09004 * 109.46674 * 269.97369 * 1 2 3 24 24 H 1.08998 * 109.47038 * 29.97393 * 1 2 3 25 25 H 1.08997 * 109.47103 * 149.98094 * 1 2 3 26 26 H 1.08006 * 120.01395 * 0.02562 * 3 2 1 27 27 H 0.96696 * 114.00122 * 90.00006 * 5 4 3 28 28 H 1.07997 * 120.01549 * 180.27280 * 6 4 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 30 30 H 1.08996 * 115.55031 * 274.33858 * 18 8 7 31 31 H 1.08996 * 117.49555 * 359.97438 * 19 18 8 32 32 H 1.08995 * 117.49577 * 145.02406 * 19 18 8 33 33 H 1.08998 * 117.49694 * 214.97781 * 20 18 8 34 34 H 1.08998 * 117.50118 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1968 0.0000 4 6 3.5844 1.1964 -0.0005 5 8 4.2651 2.3732 0.0000 6 6 4.2765 -0.0060 0.0046 7 6 3.5837 -1.2009 -0.0016 8 6 4.3350 -2.5072 -0.0026 9 1 3.6254 -3.3345 -0.0028 10 6 5.2008 -2.5876 -1.2334 11 1 5.2062 -1.7743 -1.9441 12 6 5.9863 -3.6995 -1.4524 13 7 5.9795 -4.6900 -0.5873 14 14 7.0590 -3.7995 -2.9784 15 1 6.8869 -2.5653 -3.7861 16 1 8.4820 -3.9324 -2.5753 17 1 6.6611 -4.9800 -3.7867 18 6 5.2151 -2.5904 1.2463 19 6 5.1014 -3.8495 2.1080 20 6 4.5184 -2.5258 2.6069 21 6 2.1989 -1.1990 -0.0005 22 9 1.5225 -2.3685 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6575 2.1321 0.0004 27 1 4.4624 2.7131 0.8835 28 1 5.3564 -0.0077 0.0087 29 1 6.5318 -5.4724 -0.7415 30 1 6.1971 -2.1253 1.1612 31 1 4.3994 -4.6184 1.7854 32 1 6.0089 -4.2132 2.5899 33 1 5.0424 -2.0187 3.4170 34 1 3.4332 -2.4236 2.6124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = -53.105240 kcal Electronic energy + Delta-G solvation = -18476.110397 eV Core-core repulsion = 15481.918604 eV Total energy + Delta-G solvation = -2994.191792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.20029 -39.31117 -37.01871 -35.95953 -33.04753 -32.13035 -29.64618 -27.34004 -26.49938 -23.63958 -21.55136 -21.35536 -21.06368 -18.90275 -17.44550 -16.93225 -16.70491 -15.99111 -15.09408 -14.76351 -14.53332 -14.14473 -13.41853 -13.17432 -13.06265 -13.02553 -12.69164 -12.54175 -12.01735 -11.68637 -11.28436 -11.05326 -10.97526 -10.73235 -10.50241 -10.26922 -10.15907 -9.84000 -9.66620 -8.81603 -8.78223 -8.34862 -8.10263 -7.78716 -6.02657 -4.10276 1.59654 1.76891 3.28265 3.36876 3.41686 3.97507 4.41841 4.53186 4.84660 5.03378 5.11217 5.28425 5.37416 5.51524 5.72965 5.78731 5.91393 5.94461 6.06117 6.17513 6.30564 6.37398 6.47998 6.51473 6.74538 6.82011 6.88542 6.97169 7.11170 7.21660 7.35721 7.45899 7.72941 7.91303 7.98651 8.27793 8.91769 9.54096 11.03148 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.008155 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.433453 B = 3432.577058 C = 3721.613540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.088 3.912 5 O -0.500 6.500 6 C -0.109 4.109 7 C -0.039 4.039 8 C 0.102 3.898 9 H 0.045 0.955 10 C -0.517 4.517 11 H 0.059 0.941 12 C 0.069 3.931 13 N -0.872 5.872 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.081 4.081 19 C -0.134 4.134 20 C -0.227 4.227 21 C 0.077 3.923 22 F -0.138 7.138 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.383 0.617 28 H 0.137 0.863 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 8.741 4.624 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.164 4.164 4 C 0.044 3.956 5 O -0.309 6.309 6 C -0.127 4.127 7 C -0.039 4.039 8 C 0.084 3.916 9 H 0.063 0.937 10 C -0.555 4.555 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.509 5.509 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.100 4.100 19 C -0.171 4.171 20 C -0.264 4.264 21 C 0.057 3.943 22 F -0.117 7.117 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.237 0.763 28 H 0.154 0.846 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.970 8.447 4.041 11.106 hybrid contribution 0.669 -0.294 -0.310 0.794 sum -5.301 8.153 3.732 10.417 Atomic orbital electron populations 1.20654 0.90734 1.02843 1.02228 1.19630 0.96355 0.91672 1.03801 1.20841 0.93253 0.97082 1.05232 1.18472 0.89682 0.85175 1.02304 1.84836 1.76550 1.36479 1.33026 1.21187 1.01146 0.90059 1.00329 1.20501 0.91028 0.98527 0.93892 1.17532 0.93134 0.87694 0.93224 0.93709 1.21003 1.25045 1.03788 1.05621 0.92239 1.24944 0.96672 0.95567 0.96273 1.70036 1.39214 1.06878 1.34741 0.86568 0.80251 0.78105 0.83333 1.19714 1.21023 1.21027 1.22162 0.98772 1.00102 0.88981 1.22433 1.01037 0.90870 1.02773 1.23065 0.99176 1.04318 0.99879 1.17500 0.89967 0.80634 1.06162 1.91427 1.79932 1.46288 1.94055 0.91315 0.91503 0.91330 0.85672 0.76261 0.84553 0.93091 0.89738 0.89540 0.91012 0.90956 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.83 36.01 0.35 -1.06 16 2 C -0.11 -1.89 5.88 -104.57 -0.62 -2.51 16 3 C -0.15 -2.27 9.64 -39.44 -0.38 -2.65 16 4 C 0.09 1.48 6.70 -39.23 -0.26 1.22 16 5 O -0.50 -7.27 13.50 -19.57 -0.26 -7.54 16 6 C -0.11 -2.12 8.76 -39.44 -0.35 -2.46 16 7 C -0.04 -0.83 4.39 -104.58 -0.46 -1.28 16 8 C 0.10 2.50 2.08 -92.92 -0.19 2.31 16 9 H 0.04 1.22 6.88 -51.93 -0.36 0.86 16 10 C -0.52 -13.83 8.23 -34.44 -0.28 -14.11 16 11 H 0.06 1.61 7.61 -52.48 -0.40 1.21 16 12 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 13 N -0.87 -23.91 11.44 55.43 0.63 -23.27 16 14 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.08 -1.85 3.86 -90.62 -0.35 -2.20 16 19 C -0.13 -2.92 9.05 -26.73 -0.24 -3.17 16 20 C -0.23 -4.49 9.87 -26.73 -0.26 -4.75 16 21 C 0.08 1.53 7.18 -39.42 -0.28 1.25 16 22 F -0.14 -2.90 15.39 2.25 0.03 -2.87 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.07 0.92 7.64 -51.93 -0.40 0.52 16 26 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.38 3.55 9.06 45.56 0.41 3.97 16 28 H 0.14 2.69 8.05 -52.49 -0.42 2.27 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.08 1.99 8.11 -51.93 -0.42 1.57 16 31 H 0.09 2.01 8.05 -51.93 -0.42 1.59 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -28.89 294.39 -7.27 -36.16 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.67 Total: 4.73 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -3.42 Total: -27.65 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.63 Total: -23.27 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.26 Total: -7.54 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.03 Total: -2.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.89 -7.27 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.950 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds