Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 119.98549 * 2 1 4 4 C 1.38688 * 119.96952 * 180.02562 * 3 2 1 5 5 O 1.35946 * 120.02885 * 180.02562 * 4 3 2 6 6 C 1.38729 * 119.93954 * 359.72768 * 4 3 2 7 7 C 1.38126 * 119.96927 * 0.56924 * 6 4 3 8 8 C 1.50697 * 119.98730 * 179.70705 * 7 6 4 9 9 H 1.09000 * 109.47374 * 179.72372 * 8 7 6 10 10 C 1.50699 * 109.46956 * 299.72577 * 8 7 6 11 11 H 1.08003 * 120.00271 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 8 7 13 13 N 1.31509 * 119.99895 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00268 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46809 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46948 * 120.00386 * 14 12 10 17 17 H 1.48497 * 109.47378 * 240.00673 * 14 12 10 18 18 C 1.53006 * 109.47239 * 59.72234 * 8 7 6 19 19 C 1.53001 * 117.49866 * 128.62372 * 18 8 7 20 20 C 1.53000 * 117.49497 * 59.99964 * 18 8 7 21 21 C 1.38431 * 119.98701 * 180.02562 * 2 1 3 22 22 F 1.35102 * 119.96822 * 359.97056 * 21 2 1 23 23 H 1.09004 * 109.46674 * 269.97369 * 1 2 3 24 24 H 1.08998 * 109.47038 * 29.97393 * 1 2 3 25 25 H 1.08997 * 109.47103 * 149.98094 * 1 2 3 26 26 H 1.08006 * 120.01395 * 0.02562 * 3 2 1 27 27 H 0.96696 * 114.00122 * 90.00006 * 5 4 3 28 28 H 1.07997 * 120.01549 * 180.27280 * 6 4 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 30 30 H 1.08996 * 115.55031 * 274.33858 * 18 8 7 31 31 H 1.08996 * 117.49555 * 359.97438 * 19 18 8 32 32 H 1.08995 * 117.49577 * 145.02406 * 19 18 8 33 33 H 1.08998 * 117.49694 * 214.97781 * 20 18 8 34 34 H 1.08998 * 117.50118 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1968 0.0000 4 6 3.5844 1.1964 -0.0005 5 8 4.2651 2.3732 0.0000 6 6 4.2765 -0.0060 0.0046 7 6 3.5837 -1.2009 -0.0016 8 6 4.3350 -2.5072 -0.0026 9 1 3.6254 -3.3345 -0.0028 10 6 5.2008 -2.5876 -1.2334 11 1 5.2062 -1.7743 -1.9441 12 6 5.9863 -3.6995 -1.4524 13 7 5.9795 -4.6900 -0.5873 14 14 7.0590 -3.7995 -2.9784 15 1 6.8869 -2.5653 -3.7861 16 1 8.4820 -3.9324 -2.5753 17 1 6.6611 -4.9800 -3.7867 18 6 5.2151 -2.5904 1.2463 19 6 5.1014 -3.8495 2.1080 20 6 4.5184 -2.5258 2.6069 21 6 2.1989 -1.1990 -0.0005 22 9 1.5225 -2.3685 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6575 2.1321 0.0004 27 1 4.4624 2.7131 0.8835 28 1 5.3564 -0.0077 0.0087 29 1 6.5318 -5.4724 -0.7415 30 1 6.1971 -2.1253 1.1612 31 1 4.3994 -4.6184 1.7854 32 1 6.0089 -4.2132 2.5899 33 1 5.0424 -2.0187 3.4170 34 1 3.4332 -2.4236 2.6124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = -69.716721 kcal Electronic energy + Delta-G solvation = -18476.830724 eV Core-core repulsion = 15481.918604 eV Total energy + Delta-G solvation = -2994.912120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.74651 -40.69114 -38.61315 -37.32583 -34.83542 -33.79310 -31.09248 -29.03386 -27.76729 -25.53936 -23.10225 -22.76960 -22.71159 -20.62874 -18.73171 -18.63245 -18.29534 -17.58857 -16.66119 -16.51704 -16.12225 -15.71924 -14.92178 -14.78533 -14.53212 -14.35099 -14.13643 -13.92897 -13.54064 -13.05133 -12.92108 -12.88315 -12.52487 -12.35166 -12.18743 -12.03163 -11.83798 -11.67159 -11.28901 -10.68542 -10.60571 -10.25581 -9.52989 -9.23288 -8.08218 -6.22244 0.20611 0.38136 1.38146 1.41181 1.51735 2.40962 2.62538 3.17111 3.28637 3.33155 3.47826 3.86275 3.99812 4.21706 4.29987 4.43908 4.44739 4.52362 4.68799 4.79488 4.85586 4.93180 5.00367 5.15292 5.19641 5.28540 5.37761 5.41399 5.45821 5.49797 5.60046 5.74319 5.93193 5.98399 6.29221 6.84013 6.93059 7.44117 8.96094 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.008155 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.433453 B = 3432.577058 C = 3721.613540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.134 4.134 4 C 0.105 3.895 5 O -0.502 6.502 6 C -0.127 4.127 7 C -0.063 4.063 8 C 0.108 3.892 9 H 0.003 0.997 10 C -0.532 4.532 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.893 5.893 14 Si 0.948 3.052 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.283 1.283 18 C -0.096 4.096 19 C -0.142 4.142 20 C -0.190 4.190 21 C 0.044 3.956 22 F -0.154 7.154 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.166 0.834 27 H 0.410 0.590 28 H 0.123 0.877 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 11.270 5.040 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.152 4.152 4 C 0.060 3.940 5 O -0.315 6.315 6 C -0.145 4.145 7 C -0.064 4.064 8 C 0.089 3.911 9 H 0.021 0.979 10 C -0.570 4.570 11 H 0.066 0.934 12 C -0.177 4.177 13 N -0.531 5.531 14 Si 0.774 3.226 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.209 1.209 18 C -0.115 4.115 19 C -0.179 4.179 20 C -0.227 4.227 21 C 0.025 3.975 22 F -0.132 7.132 23 H 0.106 0.894 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.184 0.816 27 H 0.269 0.731 28 H 0.141 0.859 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.751 10.993 4.478 13.656 hybrid contribution 0.887 -0.978 -0.430 1.388 sum -5.865 10.016 4.048 12.292 Atomic orbital electron populations 1.20769 0.87910 1.03918 1.03788 1.20040 0.98366 0.90506 1.01414 1.21230 0.92685 0.98153 1.03139 1.18437 0.90302 0.84889 1.00372 1.84770 1.76314 1.35031 1.35391 1.21104 1.00610 0.90757 1.02069 1.20275 0.91829 0.97728 0.96533 1.17246 0.92312 0.88313 0.93202 0.97851 1.21242 1.25652 1.03549 1.06529 0.93428 1.25625 0.97848 0.95369 0.98827 1.70145 1.39759 1.07135 1.36015 0.85660 0.78882 0.77825 0.80211 1.19700 1.20288 1.20859 1.21931 0.98423 1.01109 0.90024 1.22350 1.01213 0.90919 1.03410 1.23039 0.99197 1.01915 0.98519 1.17810 0.89770 0.81490 1.08414 1.91379 1.80033 1.47403 1.94434 0.89379 0.88496 0.92204 0.81637 0.73137 0.85893 0.93114 0.90980 0.91824 0.90206 0.87924 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 9.83 71.24 0.70 -1.75 16 2 C -0.10 -3.17 5.88 -19.83 -0.12 -3.29 16 3 C -0.13 -3.67 9.64 22.36 0.22 -3.45 16 4 C 0.10 3.26 6.70 22.49 0.15 3.41 16 5 O -0.50 -12.87 13.50 -92.94 -1.26 -14.12 16 6 C -0.13 -4.92 8.76 22.36 0.20 -4.73 16 7 C -0.06 -2.75 4.39 -19.84 -0.09 -2.84 16 8 C 0.11 5.52 2.08 -12.29 -0.03 5.49 16 9 H 0.00 0.20 6.88 -2.39 -0.02 0.18 16 10 C -0.53 -29.67 8.23 25.60 0.21 -29.46 16 11 H 0.05 2.69 7.61 -2.91 -0.02 2.67 16 12 C 0.02 1.36 5.30 84.66 0.45 1.81 16 13 N -0.89 -50.65 11.44 21.45 0.25 -50.41 16 14 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 C -0.10 -4.51 3.86 -10.79 -0.04 -4.55 16 19 C -0.14 -6.35 9.05 30.60 0.28 -6.08 16 20 C -0.19 -7.42 9.87 30.60 0.30 -7.12 16 21 C 0.04 1.78 7.18 22.37 0.16 1.94 16 22 F -0.15 -6.68 15.39 44.97 0.69 -5.98 16 23 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.10 1.64 8.08 -2.39 -0.02 1.63 16 25 H 0.06 1.48 7.64 -2.39 -0.02 1.47 16 26 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.41 5.97 9.06 -74.06 -0.67 5.30 16 28 H 0.12 4.98 8.05 -2.91 -0.02 4.95 16 29 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 30 H 0.07 3.52 8.11 -2.39 -0.02 3.50 16 31 H 0.06 3.12 8.05 -2.39 -0.02 3.10 16 32 H 0.08 3.38 8.14 -2.39 -0.02 3.37 16 33 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -64.77 294.39 4.54 -60.23 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.44 Total: 14.73 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 2.39 Total: -50.60 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.25 Total: -50.41 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.26 Total: -14.12 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.69 Total: -5.98 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.77 4.54 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.484 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds