Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35976 * 116.99970 * 2 1 4 4 C 1.38699 * 119.98668 * 0.02562 * 3 2 1 5 5 C 1.38486 * 119.98679 * 180.02562 * 4 3 2 6 6 C 1.39300 * 119.88202 * 359.95612 * 5 4 3 7 7 C 1.38484 * 119.91779 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.94676 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47106 * 84.99646 * 8 7 6 10 10 C 1.50698 * 109.47307 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00332 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47123 * 90.00526 * 14 12 10 16 16 H 1.48501 * 109.47446 * 210.00445 * 14 12 10 17 17 H 1.48506 * 109.47133 * 330.00624 * 14 12 10 18 18 C 1.38260 * 120.10070 * 0.02562 * 7 6 5 19 19 O 1.36600 * 108.61024 * 179.97438 * 6 5 4 20 20 C 1.43983 * 105.47471 * 17.30107 * 19 6 5 21 21 O 1.36505 * 131.47946 * 179.97438 * 5 4 3 22 22 H 1.08994 * 109.47288 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47176 * 300.00611 * 1 2 3 24 24 H 1.08997 * 109.46771 * 60.00264 * 1 2 3 25 25 H 1.07994 * 120.00393 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47084 * 204.99813 * 8 7 6 27 27 H 1.09005 * 109.47224 * 324.99938 * 8 7 6 28 28 H 1.09000 * 109.47651 * 300.00377 * 9 8 7 29 29 H 1.09005 * 109.46840 * 60.00057 * 9 8 7 30 30 H 0.96996 * 120.00041 * 179.97438 * 13 12 10 31 31 H 1.08004 * 119.95502 * 179.97438 * 18 7 6 32 32 H 1.08996 * 110.56945 * 214.28566 * 20 19 6 33 33 H 1.09001 * 110.57365 * 91.41846 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2907 2.3746 0.0005 5 6 1.9194 3.6085 0.0000 6 6 3.3107 3.6786 -0.0002 7 6 4.0608 2.5145 -0.0003 8 6 5.5660 2.5896 -0.0011 9 6 6.0698 2.7409 1.4357 10 6 7.5750 2.8153 1.4350 11 1 8.1179 2.7605 0.5030 12 6 8.2588 2.9542 2.6241 13 7 7.5977 3.0214 3.7590 14 14 10.1245 3.0472 2.6232 15 1 10.5495 4.4648 2.5003 16 1 10.6490 2.4815 3.8922 17 1 10.6584 2.2691 1.4765 18 6 3.4310 1.2837 -0.0008 19 8 3.6809 4.9934 -0.0013 20 6 2.5098 5.7227 0.4109 21 8 1.4187 4.8784 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2123 2.3179 0.0014 26 1 5.9751 1.6774 -0.4354 27 1 5.8868 3.4483 -0.5908 28 1 5.6608 3.6531 1.8700 29 1 5.7491 1.8821 2.0254 30 1 8.0789 3.1188 4.5956 31 1 4.0184 0.3774 -0.0014 32 1 2.4608 6.6864 -0.0959 33 1 2.5032 5.8570 1.4926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -83.470414 kcal Electronic energy + Delta-G solvation = -17974.841992 eV Core-core repulsion = 14966.960678 eV Total energy + Delta-G solvation = -3007.881315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88849 -39.50596 -36.85619 -35.91245 -33.68789 -31.82284 -29.83661 -28.64851 -27.27819 -25.36282 -25.04047 -22.64468 -22.02018 -20.29090 -18.19894 -17.52107 -17.29119 -16.71641 -16.23645 -15.72546 -15.35276 -14.74416 -14.46373 -14.05143 -13.81326 -13.24894 -12.81219 -12.68740 -12.64296 -12.34566 -12.21571 -11.73345 -11.55954 -11.22782 -10.93807 -10.88131 -10.52295 -9.99879 -9.83087 -9.52244 -9.09241 -8.32444 -8.28374 -7.47120 -5.97331 -3.99999 1.41067 1.51074 2.93795 3.34388 3.36460 3.40344 3.43885 3.70435 3.87639 4.48217 4.71779 4.87923 4.96852 5.07796 5.08944 5.16122 5.28324 5.38539 5.39384 5.54952 5.73908 5.85169 6.20866 6.23620 6.35397 6.55065 6.66604 6.86875 7.03582 7.21776 7.53531 7.70015 7.83512 8.02242 8.42515 9.06438 9.63654 11.13939 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.005766 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.258539 B = 4855.115215 C = 5653.942642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.136 3.864 4 C -0.207 4.207 5 C 0.067 3.933 6 C -0.001 4.001 7 C 0.001 3.999 8 C -0.077 4.077 9 C 0.031 3.969 10 C -0.519 4.519 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.142 4.142 19 O -0.298 6.298 20 C 0.213 3.787 21 O -0.315 6.315 22 H 0.098 0.902 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.134 0.866 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -0.844 -7.259 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.090 3.910 4 C -0.226 4.226 5 C 0.023 3.977 6 C -0.045 4.045 7 C 0.000 4.000 8 C -0.115 4.115 9 C -0.006 4.006 10 C -0.558 4.558 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.161 4.161 19 O -0.214 6.214 20 C 0.101 3.899 21 O -0.232 6.232 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.144 0.856 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.666 -0.812 -7.172 16.346 hybrid contribution 0.613 0.552 0.284 0.872 sum -14.052 -0.261 -6.888 15.652 Atomic orbital electron populations 1.23042 0.78756 1.03738 1.01357 1.86126 1.21096 1.26122 1.89035 1.18435 0.91800 0.83294 0.97432 1.19774 1.00080 0.88220 1.14531 1.19371 0.90907 0.85771 1.01694 1.19463 0.91186 0.85326 1.08541 1.19220 0.97870 0.87846 0.95043 1.20847 0.86283 1.01956 1.02388 1.19063 0.95597 0.97512 0.88398 1.21225 0.91667 1.50046 0.92835 0.92509 1.25013 0.98413 0.95338 0.95621 1.69975 1.35431 1.50384 0.97662 0.86585 0.85738 0.78214 0.77407 1.20691 1.21252 1.19812 1.20121 0.90798 0.97699 1.07466 1.87435 1.34511 1.14448 1.84981 1.25575 0.71280 0.92938 1.00147 1.87272 1.36545 1.14475 1.84881 0.88326 0.92652 0.92749 0.84821 0.91462 0.91515 0.96354 0.96266 0.93020 0.83725 0.85555 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.27 10.50 -19.67 -0.21 -4.48 16 3 C 0.14 2.12 6.68 -39.26 -0.26 1.86 16 4 C -0.21 -3.12 9.05 -39.32 -0.36 -3.48 16 5 C 0.07 1.15 7.15 -39.10 -0.28 0.87 16 6 C 0.00 -0.02 6.83 -39.10 -0.27 -0.29 16 7 C 0.00 0.02 5.14 -104.52 -0.54 -0.52 16 8 C -0.08 -1.67 5.28 -27.88 -0.15 -1.82 16 9 C 0.03 0.83 4.95 -27.89 -0.14 0.69 16 10 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.14 -2.47 9.61 -39.42 -0.38 -2.85 16 19 O -0.30 -5.57 11.40 -46.02 -0.52 -6.09 16 20 C 0.21 2.98 8.89 101.05 0.90 3.88 16 21 O -0.32 -4.94 11.40 -45.70 -0.52 -5.47 16 22 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 26 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 27 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 32 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 287.99 15.07 4.34 4.34 Total: -1.00 -32.82 287.99 -6.13 -38.95 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.04 Total: -3.54 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.89 Total: -14.02 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.25 Total: -16.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.82 -6.13 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.524 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds