Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35976 * 116.99970 * 2 1 4 4 C 1.38699 * 119.98668 * 0.02562 * 3 2 1 5 5 C 1.38486 * 119.98679 * 180.02562 * 4 3 2 6 6 C 1.39300 * 119.88202 * 359.95612 * 5 4 3 7 7 C 1.38484 * 119.91779 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.94676 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47106 * 84.99646 * 8 7 6 10 10 C 1.50698 * 109.47307 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00332 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47123 * 90.00526 * 14 12 10 16 16 H 1.48501 * 109.47446 * 210.00445 * 14 12 10 17 17 H 1.48506 * 109.47133 * 330.00624 * 14 12 10 18 18 C 1.38260 * 120.10070 * 0.02562 * 7 6 5 19 19 O 1.36600 * 108.61024 * 179.97438 * 6 5 4 20 20 C 1.43983 * 105.47471 * 17.30107 * 19 6 5 21 21 O 1.36505 * 131.47946 * 179.97438 * 5 4 3 22 22 H 1.08994 * 109.47288 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47176 * 300.00611 * 1 2 3 24 24 H 1.08997 * 109.46771 * 60.00264 * 1 2 3 25 25 H 1.07994 * 120.00393 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47084 * 204.99813 * 8 7 6 27 27 H 1.09005 * 109.47224 * 324.99938 * 8 7 6 28 28 H 1.09000 * 109.47651 * 300.00377 * 9 8 7 29 29 H 1.09005 * 109.46840 * 60.00057 * 9 8 7 30 30 H 0.96996 * 120.00041 * 179.97438 * 13 12 10 31 31 H 1.08004 * 119.95502 * 179.97438 * 18 7 6 32 32 H 1.08996 * 110.56945 * 214.28566 * 20 19 6 33 33 H 1.09001 * 110.57365 * 91.41846 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2907 2.3746 0.0005 5 6 1.9194 3.6085 0.0000 6 6 3.3107 3.6786 -0.0002 7 6 4.0608 2.5145 -0.0003 8 6 5.5660 2.5896 -0.0011 9 6 6.0698 2.7409 1.4357 10 6 7.5750 2.8153 1.4350 11 1 8.1179 2.7605 0.5030 12 6 8.2588 2.9542 2.6241 13 7 7.5977 3.0214 3.7590 14 14 10.1245 3.0472 2.6232 15 1 10.5495 4.4648 2.5003 16 1 10.6490 2.4815 3.8922 17 1 10.6584 2.2691 1.4765 18 6 3.4310 1.2837 -0.0008 19 8 3.6809 4.9934 -0.0013 20 6 2.5098 5.7227 0.4109 21 8 1.4187 4.8784 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2123 2.3179 0.0014 26 1 5.9751 1.6774 -0.4354 27 1 5.8868 3.4483 -0.5908 28 1 5.6608 3.6531 1.8700 29 1 5.7491 1.8821 2.0254 30 1 8.0789 3.1188 4.5956 31 1 4.0184 0.3774 -0.0014 32 1 2.4608 6.6864 -0.0959 33 1 2.5032 5.8570 1.4926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260278170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -104.880835 kcal Electronic energy + Delta-G solvation = -17975.770418 eV Core-core repulsion = 14966.960678 eV Total energy + Delta-G solvation = -3008.809740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.15139 -40.63282 -38.18288 -37.19169 -35.62836 -33.64913 -31.12000 -30.26119 -28.21797 -26.91913 -26.50816 -23.99815 -23.70840 -21.88940 -19.44522 -18.84362 -18.57247 -18.32117 -17.88716 -16.75798 -16.50474 -16.42902 -15.93950 -15.36091 -15.17012 -14.85325 -14.36883 -14.08159 -13.93631 -13.84582 -13.79046 -13.27410 -12.82290 -12.73404 -12.51572 -12.43205 -12.10619 -11.79172 -11.69700 -11.22707 -10.97232 -10.55579 -9.68144 -8.75955 -8.19187 -6.31207 0.08990 0.18661 1.41255 1.43080 1.54398 1.73151 2.32468 2.41398 2.51421 2.59252 3.13837 3.41557 3.77806 3.93132 4.00855 4.03888 4.19161 4.35541 4.44452 4.45844 4.50121 4.71917 4.77417 4.81071 4.94873 4.98619 5.14815 5.24626 5.39431 5.48447 5.73207 5.82429 5.99895 6.22071 6.37587 6.84430 7.37934 8.92804 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.005766 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.258539 B = 4855.115215 C = 5653.942642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.145 3.855 4 C -0.195 4.195 5 C 0.063 3.937 6 C -0.027 4.027 7 C -0.025 4.025 8 C -0.062 4.062 9 C 0.041 3.959 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.261 1.261 18 C -0.152 4.152 19 O -0.327 6.327 20 C 0.205 3.795 21 O -0.314 6.314 22 H 0.125 0.875 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.169 0.831 26 H 0.078 0.922 27 H 0.059 0.941 28 H -0.016 1.016 29 H -0.005 1.005 30 H 0.264 0.736 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 -1.179 -7.980 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.099 3.901 4 C -0.214 4.214 5 C 0.019 3.981 6 C -0.071 4.071 7 C -0.026 4.026 8 C -0.100 4.100 9 C 0.004 3.996 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.792 3.208 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.171 4.171 19 O -0.244 6.244 20 C 0.094 3.906 21 O -0.230 6.230 22 H 0.143 0.857 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.186 0.814 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.003 0.997 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.615 -1.151 -7.907 17.540 hybrid contribution 0.742 0.629 0.524 1.105 sum -14.872 -0.522 -7.382 16.612 Atomic orbital electron populations 1.23455 0.76030 1.06056 1.02555 1.86132 1.23843 1.24921 1.88495 1.18390 0.91288 0.84366 0.96056 1.20124 1.01751 0.87110 1.12440 1.19574 0.90161 0.86861 1.01544 1.19684 0.92430 0.85397 1.09611 1.19065 0.96537 0.89222 0.97736 1.20527 0.88455 1.02091 0.98892 1.18856 0.94989 0.94646 0.91101 1.21664 0.92872 1.50144 0.93378 0.91829 1.25998 1.04069 0.94608 0.95072 1.70116 1.37735 1.51151 0.98431 0.85406 0.78883 0.78611 0.77895 1.19869 1.20639 1.18465 1.20199 0.92150 0.97073 1.07668 1.87377 1.36890 1.14748 1.85429 1.26058 0.69578 0.93577 1.01402 1.87254 1.36872 1.13978 1.84894 0.85669 0.91670 0.91203 0.81407 0.90310 0.92264 0.99723 0.98686 0.92752 0.83242 0.81511 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -8.08 10.50 -93.28 -0.98 -9.06 16 3 C 0.14 4.34 6.68 22.48 0.15 4.49 16 4 C -0.20 -5.48 9.05 22.44 0.20 -5.28 16 5 C 0.06 2.11 7.15 22.58 0.16 2.27 16 6 C -0.03 -1.06 6.83 22.58 0.15 -0.91 16 7 C -0.02 -0.99 5.14 -19.80 -0.10 -1.10 16 8 C -0.06 -2.80 5.28 29.85 0.16 -2.64 16 9 C 0.04 2.29 4.95 29.85 0.15 2.44 16 10 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 11 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 C -0.15 -5.31 9.61 22.37 0.22 -5.10 16 19 O -0.33 -12.51 11.40 -77.23 -0.88 -13.39 16 20 C 0.20 5.58 8.89 113.37 1.01 6.59 16 21 O -0.31 -9.38 11.40 -76.10 -0.87 -10.24 16 22 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 24 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.17 3.46 6.29 -2.91 -0.02 3.44 16 26 H 0.08 3.25 8.05 -2.39 -0.02 3.24 16 27 H 0.06 2.68 8.12 -2.38 -0.02 2.66 16 28 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.15 4.89 8.06 -2.91 -0.02 4.86 16 32 H 0.17 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -72.43 287.99 4.60 -67.83 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.11 Total: 4.78 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.90 Total: -29.02 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -2.73 Total: -32.70 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.43 4.60 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.052 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds