Wall clock time and date at job start Mon Mar 30 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47193 * 270.00125 * 3 2 1 5 5 H 1.48497 * 109.47058 * 30.00642 * 3 2 1 6 6 H 1.48508 * 109.47035 * 150.00370 * 3 2 1 7 7 C 1.37881 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99804 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47375 * 180.02562 * 10 9 7 12 12 C 1.38655 * 119.98581 * 90.00032 * 11 10 9 13 13 O 1.35973 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.38660 * 119.99692 * 179.97438 * 12 11 10 15 15 C 1.38213 * 120.05188 * 0.34701 * 14 12 11 16 16 C 1.38645 * 120.13695 * 359.42461 * 15 14 12 17 17 C 1.38645 * 119.98622 * 269.98354 * 11 10 9 18 18 O 1.36110 * 119.35445 * 359.64344 * 17 11 10 19 19 C 1.43164 * 116.73014 * 162.87990 * 18 17 11 20 20 C 1.53473 * 108.26326 * 46.21631 * 19 18 17 21 21 O 1.36209 * 119.33412 * 179.97438 * 16 15 14 22 22 H 0.96999 * 119.99484 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47279 * 59.99414 * 9 7 2 24 24 H 1.09002 * 109.47293 * 300.00031 * 9 7 2 25 25 H 1.09000 * 109.46516 * 59.99912 * 10 9 7 26 26 H 1.08997 * 109.46937 * 300.00359 * 10 9 7 27 27 H 0.96700 * 114.00100 * 269.98078 * 13 12 11 28 28 H 1.08002 * 119.96967 * 180.02562 * 14 12 11 29 29 H 1.08003 * 119.93006 * 179.68724 * 15 14 12 30 30 H 1.08995 * 109.70531 * 286.52325 * 19 18 17 31 31 H 1.09007 * 109.70802 * 165.90928 * 19 18 17 32 32 H 1.09003 * 109.70884 * 180.58732 * 20 19 18 33 33 H 1.09001 * 109.70982 * 59.95183 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 6 6.2214 -2.6367 1.2000 13 8 5.5412 -2.6371 2.3774 14 6 7.6080 -2.6373 1.2004 15 6 8.3004 -2.6307 0.0042 16 6 7.6114 -2.6355 -1.1990 17 6 6.2214 -2.6372 -1.2018 18 8 5.5274 -2.6450 -2.3726 19 6 6.2482 -2.2688 -3.5510 20 6 7.5937 -3.0072 -3.5480 21 8 8.3103 -2.6284 -2.3681 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1506 -0.8907 26 1 3.6584 -3.1503 0.8892 27 1 5.3444 -1.7538 2.7183 28 1 8.1473 -2.6377 2.1361 29 1 9.3804 -2.6261 0.0068 30 1 6.4198 -1.1925 -3.5489 31 1 5.6772 -2.5489 -4.4363 32 1 8.1675 -2.7293 -4.4321 33 1 7.4222 -4.0837 -3.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:54 Heat of formation + Delta-G solvation = -98.278630 kcal Electronic energy + Delta-G solvation = -18422.246553 eV Core-core repulsion = 15413.723106 eV Total energy + Delta-G solvation = -3008.523447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16507 -38.77808 -37.15760 -35.69894 -33.96014 -32.00880 -30.72228 -29.20503 -27.82979 -25.40129 -24.46903 -21.99788 -20.97282 -20.22661 -18.56586 -17.90392 -17.17735 -16.66274 -16.55163 -15.20254 -15.02005 -14.59932 -14.51606 -14.19590 -14.16783 -13.45378 -13.17489 -12.81378 -12.61346 -12.21739 -12.13043 -11.57627 -11.05113 -10.94671 -10.83074 -10.65564 -10.41486 -10.04563 -9.80363 -9.61753 -9.15091 -8.51908 -8.07944 -7.81800 -6.02312 -3.99611 1.37393 1.45528 3.07478 3.29334 3.30526 3.37788 3.41152 3.77551 4.25014 4.46078 4.57751 4.74314 4.80033 4.88448 5.17380 5.25348 5.31734 5.44493 5.47761 5.51278 5.93171 6.05770 6.21791 6.44367 6.56113 6.58535 6.70105 6.93746 7.00568 7.34192 7.47049 7.53459 7.80654 7.96526 8.56825 9.03438 9.60123 11.11279 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.007399 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.822322 B = 3783.525077 C = 4438.286681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.062 4.062 11 C -0.083 4.083 12 C 0.107 3.893 13 O -0.489 6.489 14 C -0.142 4.142 15 C -0.114 4.114 16 C 0.036 3.964 17 C 0.065 3.935 18 O -0.292 6.292 19 C 0.019 3.981 20 C 0.021 3.979 21 O -0.311 6.311 22 H 0.262 0.738 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.392 0.608 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.518 -4.240 -3.921 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.099 4.099 11 C -0.084 4.084 12 C 0.062 3.938 13 O -0.299 6.299 14 C -0.160 4.160 15 C -0.133 4.133 16 C -0.008 4.008 17 C 0.019 3.981 18 O -0.206 6.206 19 C -0.057 4.057 20 C -0.054 4.054 21 O -0.226 6.226 22 H 0.072 0.928 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.248 0.752 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.380 -4.730 -4.040 18.460 hybrid contribution 0.346 1.484 -0.263 1.546 sum 17.726 -3.246 -4.302 18.527 Atomic orbital electron populations 1.69916 1.06234 1.26777 1.51369 1.25005 0.94698 0.99015 0.94703 0.86800 0.80301 0.83811 0.78473 1.20411 1.21366 1.19150 1.21128 0.89295 0.94522 1.50424 0.90887 1.19449 0.96961 0.91257 0.95932 1.20425 0.86169 1.00622 1.02684 1.20076 0.98847 1.00281 0.89232 1.17909 0.89186 1.01745 0.84944 1.84770 1.76429 1.33750 1.34979 1.21090 0.93264 1.03833 0.97854 1.20092 0.99868 1.04487 0.88854 1.18846 0.89254 1.05894 0.86820 1.18534 0.88678 1.03966 0.86876 1.86423 1.36992 1.83995 1.13165 1.23621 0.93597 1.00124 0.88327 1.23601 0.94183 1.00021 0.87638 1.86273 1.37717 1.84787 1.13816 0.92782 0.97101 0.97115 0.91142 0.90767 0.75169 0.84845 0.84905 0.90579 0.86115 0.86390 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.03 4.02 -27.89 -0.11 -0.08 16 10 C -0.06 -1.33 4.82 -27.89 -0.13 -1.47 16 11 C -0.08 -1.58 5.16 -104.32 -0.54 -2.12 16 12 C 0.11 1.80 6.67 -39.27 -0.26 1.54 16 13 O -0.49 -7.85 12.54 -19.65 -0.25 -8.10 16 14 C -0.14 -2.00 9.98 -39.43 -0.39 -2.40 16 15 C -0.11 -1.60 9.96 -39.44 -0.39 -1.99 16 16 C 0.04 0.57 6.49 -39.15 -0.25 0.32 16 17 C 0.06 1.16 6.47 -39.15 -0.25 0.90 16 18 O -0.29 -5.09 9.40 -32.87 -0.31 -5.40 16 19 C 0.02 0.23 7.26 37.40 0.27 0.51 16 20 C 0.02 0.22 7.26 37.40 0.27 0.50 16 21 O -0.31 -4.34 10.42 -33.19 -0.35 -4.68 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.07 1.57 7.49 -51.93 -0.39 1.18 16 26 H 0.07 1.61 7.52 -51.93 -0.39 1.22 16 27 H 0.39 4.96 9.06 45.56 0.41 5.38 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 281.59 15.07 4.24 4.24 Total: -1.00 -34.09 281.59 -6.04 -40.13 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.26 Total: 1.58 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.23 Total: -17.73 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.38 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.90 Total: -18.18 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.09 -6.04 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.152 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds