Wall clock time and date at job start Mon Mar 30 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47193 * 270.00125 * 3 2 1 5 5 H 1.48497 * 109.47058 * 30.00642 * 3 2 1 6 6 H 1.48508 * 109.47035 * 150.00370 * 3 2 1 7 7 C 1.37881 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99804 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47375 * 180.02562 * 10 9 7 12 12 C 1.38655 * 119.98581 * 90.00032 * 11 10 9 13 13 O 1.35973 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.38660 * 119.99692 * 179.97438 * 12 11 10 15 15 C 1.38213 * 120.05188 * 0.34701 * 14 12 11 16 16 C 1.38645 * 120.13695 * 359.42461 * 15 14 12 17 17 C 1.38645 * 119.98622 * 269.98354 * 11 10 9 18 18 O 1.36110 * 119.35445 * 359.64344 * 17 11 10 19 19 C 1.43164 * 116.73014 * 162.87990 * 18 17 11 20 20 C 1.53473 * 108.26326 * 46.21631 * 19 18 17 21 21 O 1.36209 * 119.33412 * 179.97438 * 16 15 14 22 22 H 0.96999 * 119.99484 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47279 * 59.99414 * 9 7 2 24 24 H 1.09002 * 109.47293 * 300.00031 * 9 7 2 25 25 H 1.09000 * 109.46516 * 59.99912 * 10 9 7 26 26 H 1.08997 * 109.46937 * 300.00359 * 10 9 7 27 27 H 0.96700 * 114.00100 * 269.98078 * 13 12 11 28 28 H 1.08002 * 119.96967 * 180.02562 * 14 12 11 29 29 H 1.08003 * 119.93006 * 179.68724 * 15 14 12 30 30 H 1.08995 * 109.70531 * 286.52325 * 19 18 17 31 31 H 1.09007 * 109.70802 * 165.90928 * 19 18 17 32 32 H 1.09003 * 109.70884 * 180.58732 * 20 19 18 33 33 H 1.09001 * 109.70982 * 59.95183 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 6 6.2214 -2.6367 1.2000 13 8 5.5412 -2.6371 2.3774 14 6 7.6080 -2.6373 1.2004 15 6 8.3004 -2.6307 0.0042 16 6 7.6114 -2.6355 -1.1990 17 6 6.2214 -2.6372 -1.2018 18 8 5.5274 -2.6450 -2.3726 19 6 6.2482 -2.2688 -3.5510 20 6 7.5937 -3.0072 -3.5480 21 8 8.3103 -2.6284 -2.3681 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1506 -0.8907 26 1 3.6584 -3.1503 0.8892 27 1 5.3444 -1.7538 2.7183 28 1 8.1473 -2.6377 2.1361 29 1 9.3804 -2.6261 0.0068 30 1 6.4198 -1.1925 -3.5489 31 1 5.6772 -2.5489 -4.4363 32 1 8.1675 -2.7293 -4.4321 33 1 7.4222 -4.0837 -3.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:54 Heat of formation + Delta-G solvation = -123.212022 kcal Electronic energy + Delta-G solvation = -18423.327746 eV Core-core repulsion = 15413.723106 eV Total energy + Delta-G solvation = -3009.604640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.28614 -39.96709 -38.28600 -36.87754 -35.84612 -33.95887 -31.75268 -30.82131 -28.95344 -27.16293 -25.55426 -23.61146 -22.07196 -21.88982 -19.75393 -19.09341 -18.90246 -18.17349 -17.72361 -16.53582 -16.18973 -16.05051 -15.72024 -15.62779 -15.27118 -14.94441 -14.72311 -14.46034 -14.21357 -13.58625 -13.41119 -13.14257 -12.85454 -12.31573 -12.04148 -11.91900 -11.82205 -11.76191 -11.61314 -11.45378 -11.06402 -10.78828 -9.38804 -8.96815 -8.31068 -6.35371 0.17980 0.25728 1.32625 1.34066 1.46635 2.03829 2.29137 2.33762 2.59268 3.03502 3.28652 3.44013 3.65110 3.95525 3.98813 4.07319 4.24440 4.33465 4.49446 4.59052 4.62855 4.67754 4.76635 4.98180 5.06560 5.11426 5.31417 5.41894 5.55111 5.60189 5.63315 5.94062 6.26620 6.41024 6.70974 6.85234 7.28548 8.86019 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.007399 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.822322 B = 3783.525077 C = 4438.286681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.030 0.970 9 C 0.013 3.987 10 C -0.046 4.046 11 C -0.120 4.120 12 C 0.100 3.900 13 O -0.500 6.500 14 C -0.131 4.131 15 C -0.103 4.103 16 C 0.032 3.968 17 C 0.050 3.950 18 O -0.326 6.326 19 C 0.008 3.992 20 C 0.021 3.979 21 O -0.315 6.315 22 H 0.267 0.733 23 H 0.022 0.978 24 H 0.007 0.993 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.405 0.595 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.980 -3.211 -4.124 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.048 0.952 9 C -0.025 4.025 10 C -0.084 4.084 11 C -0.121 4.121 12 C 0.055 3.945 13 O -0.312 6.312 14 C -0.150 4.150 15 C -0.121 4.121 16 C -0.013 4.013 17 C 0.005 3.995 18 O -0.241 6.241 19 C -0.067 4.067 20 C -0.053 4.053 21 O -0.230 6.230 22 H 0.076 0.924 23 H 0.040 0.960 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.263 0.737 28 H 0.185 0.815 29 H 0.184 0.816 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.854 -3.712 -4.248 21.604 hybrid contribution -0.753 1.065 -0.271 1.332 sum 20.102 -2.648 -4.519 20.773 Atomic orbital electron populations 1.70069 1.08242 1.28207 1.52524 1.25988 0.95620 1.03394 0.93998 0.85655 0.79569 0.78270 0.79136 1.19522 1.20399 1.16969 1.21427 0.91803 0.93160 1.50542 0.95210 1.19285 0.93770 0.93505 0.95893 1.20048 0.89040 0.98259 1.01044 1.19922 0.96855 1.04169 0.91136 1.18114 0.90371 1.01816 0.84228 1.84731 1.76691 1.35061 1.34755 1.21390 0.91945 1.02159 0.99463 1.20558 1.01484 1.02082 0.87993 1.19031 0.88462 1.05564 0.88267 1.18686 0.89771 1.04400 0.86645 1.86365 1.38990 1.84304 1.14401 1.23997 0.94877 1.00426 0.87407 1.23900 0.93566 1.00138 0.87718 1.86264 1.37954 1.84745 1.14056 0.92387 0.96006 0.97512 0.93187 0.91993 0.73682 0.81514 0.81565 0.90711 0.83588 0.82280 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 2 C 0.01 0.41 5.47 84.66 0.46 0.87 16 3 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.53 -32.13 9.66 25.60 0.25 -31.89 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C 0.01 0.64 4.02 29.85 0.12 0.76 16 10 C -0.05 -2.09 4.82 29.85 0.14 -1.95 16 11 C -0.12 -4.55 5.16 -19.67 -0.10 -4.65 16 12 C 0.10 3.22 6.67 22.47 0.15 3.37 16 13 O -0.50 -15.57 12.54 -93.24 -1.17 -16.74 16 14 C -0.13 -3.27 9.98 22.36 0.22 -3.05 16 15 C -0.10 -2.50 9.96 22.36 0.22 -2.27 16 16 C 0.03 0.92 6.49 22.55 0.15 1.07 16 17 C 0.05 1.77 6.47 22.55 0.15 1.91 16 18 O -0.33 -11.41 9.40 -82.58 -0.78 -12.19 16 19 C 0.01 0.18 7.26 72.14 0.52 0.70 16 20 C 0.02 0.39 7.26 72.14 0.52 0.91 16 21 O -0.32 -7.84 10.42 -83.71 -0.87 -8.71 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 24 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 25 H 0.05 2.37 7.49 -2.39 -0.02 2.36 16 26 H 0.06 2.84 7.52 -2.39 -0.02 2.82 16 27 H 0.40 9.78 9.06 -74.06 -0.67 9.11 16 28 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.15 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.27 281.59 2.58 -73.69 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.40 Total: 11.57 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 2.81 Total: -34.21 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.30 Total: -60.57 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -2.82 Total: -37.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -76.27 2.58 -73.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.525 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds