Wall clock time and date at job start Mon Mar 30 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38695 * 119.98495 * 359.72652 * 3 2 1 5 5 C 1.38490 * 119.98806 * 179.76382 * 4 3 2 6 6 C 1.39304 * 119.87821 * 0.51377 * 5 4 3 7 7 C 1.38483 * 119.92238 * 359.73551 * 6 5 4 8 8 C 1.38262 * 120.09533 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.95803 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46888 * 265.01937 * 9 8 7 11 11 C 1.50701 * 109.47201 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99717 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00448 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99537 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00311 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46751 * 60.00383 * 15 13 11 17 17 H 1.48500 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46997 * 300.00520 * 15 13 11 19 19 O 1.36603 * 108.60862 * 179.74497 * 6 5 4 20 20 C 1.43983 * 105.47739 * 17.28586 * 19 6 5 21 21 O 1.36504 * 131.48334 * 180.17674 * 5 4 3 22 22 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00770 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.95182 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.46733 * 25.01596 * 9 8 7 28 28 H 1.09003 * 109.46894 * 145.01690 * 9 8 7 29 29 H 1.09003 * 109.46922 * 300.00070 * 10 9 8 30 30 H 1.08994 * 109.47312 * 59.99574 * 10 9 8 31 31 H 0.97002 * 119.99677 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.57094 * 91.42507 * 20 19 6 33 33 H 1.09003 * 110.57122 * 214.29161 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2906 2.3746 -0.0057 5 6 1.9191 3.6086 -0.0008 6 6 3.3104 3.6788 -0.0009 7 6 4.0607 2.5148 -0.0004 8 6 3.4310 1.2840 -0.0003 9 6 4.2506 0.0192 -0.0004 10 6 4.4227 -0.4768 -1.4374 11 6 5.2428 -1.7411 -1.4376 12 1 5.6054 -2.1497 -0.5059 13 6 5.5303 -2.3763 -2.6271 14 7 5.0892 -1.8785 -3.7616 15 14 6.5474 -3.9431 -2.6273 16 1 5.8553 -4.9825 -1.8238 17 1 6.7144 -4.4246 -4.0221 18 1 7.8815 -3.6672 -2.0363 19 8 3.6806 4.9937 -0.0013 20 6 2.5094 5.7227 0.4109 21 8 1.4183 4.8785 -0.0014 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2121 2.3179 -0.0098 26 1 5.1394 2.5686 -0.0009 27 1 5.2297 0.2209 0.4341 28 1 3.7416 -0.7435 0.5889 29 1 3.4435 -0.6783 -1.8719 30 1 4.9316 0.2860 -2.0266 31 1 5.2918 -2.3251 -4.5985 32 1 2.5025 5.8565 1.4926 33 1 2.4603 6.6867 -0.0956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:49 Heat of formation + Delta-G solvation = -81.778751 kcal Electronic energy + Delta-G solvation = -17976.566924 eV Core-core repulsion = 14968.758966 eV Total energy + Delta-G solvation = -3007.807958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97916 -39.51188 -36.56083 -36.07392 -33.73714 -31.84928 -29.62768 -28.78039 -27.16258 -25.78156 -24.60665 -22.34178 -22.25852 -20.40474 -18.48139 -17.47018 -17.29502 -16.62677 -16.01146 -15.57625 -15.31351 -14.74857 -14.42567 -14.30795 -13.84703 -13.29245 -12.83858 -12.83285 -12.54492 -12.38832 -12.02508 -11.59045 -11.51285 -11.19627 -10.86120 -10.80322 -10.52479 -9.98541 -9.74780 -9.43521 -9.04535 -8.46953 -8.27589 -7.36355 -5.92899 -3.95318 1.40641 1.48521 2.86482 3.37841 3.41941 3.44424 3.49711 3.60647 3.83677 4.51612 4.66733 4.69168 4.87864 5.08428 5.18009 5.28016 5.32042 5.42704 5.46626 5.62617 5.72085 5.92256 6.14268 6.23774 6.42928 6.47560 6.75947 6.88808 7.11873 7.21472 7.64329 7.76284 7.92343 8.08220 8.48110 9.11411 9.67856 11.18276 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.005413 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.891701 B = 5171.947234 C = 5788.932983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.139 3.861 4 C -0.190 4.190 5 C 0.049 3.951 6 C -0.008 4.008 7 C -0.063 4.063 8 C -0.076 4.076 9 C -0.067 4.067 10 C 0.031 3.969 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 O -0.311 6.311 20 C 0.215 3.785 21 O -0.314 6.314 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.078 0.922 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 11.275 9.410 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.093 3.907 4 C -0.209 4.209 5 C 0.005 3.995 6 C -0.051 4.051 7 C -0.081 4.081 8 C -0.077 4.077 9 C -0.104 4.104 10 C -0.006 4.006 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 O -0.227 6.227 20 C 0.103 3.897 21 O -0.230 6.230 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.557 11.246 9.109 16.813 hybrid contribution 0.174 -0.345 -0.141 0.411 sum -8.383 10.901 8.968 16.418 Atomic orbital electron populations 1.23066 0.79099 1.03991 1.00883 1.86290 1.20609 1.25257 1.88264 1.18358 0.91545 0.83558 0.97207 1.19900 1.00298 0.88201 1.12496 1.19259 0.90823 0.85588 1.03823 1.19608 0.91886 0.84936 1.08703 1.19821 1.00236 0.87098 1.00973 1.19520 0.90758 0.96149 1.01258 1.20682 0.96671 0.90894 1.02161 1.19060 0.97299 0.95574 0.88677 1.21207 1.32833 1.08953 0.92705 0.92649 1.25006 0.96142 0.97565 0.95669 1.69968 1.45932 1.39928 0.97640 0.86670 0.80780 0.83732 0.76873 1.20257 1.21376 1.20272 1.87348 1.35087 1.14862 1.85436 1.25501 0.71517 0.93109 0.99620 1.87292 1.36100 1.14576 1.85036 0.92748 0.93059 0.88135 0.84648 0.84060 0.92078 0.91340 0.96060 0.96617 0.93024 0.90435 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.29 -5.08 9.62 -19.69 -0.19 -5.27 16 3 C 0.14 2.47 6.66 -39.26 -0.26 2.21 16 4 C -0.19 -2.99 9.05 -39.32 -0.36 -3.34 16 5 C 0.05 0.80 7.15 -39.09 -0.28 0.52 16 6 C -0.01 -0.13 7.15 -39.10 -0.28 -0.41 16 7 C -0.06 -1.10 9.69 -39.48 -0.38 -1.48 16 8 C -0.08 -1.44 5.15 -104.46 -0.54 -1.98 16 9 C -0.07 -1.42 5.00 -27.88 -0.14 -1.56 16 10 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 O -0.31 -4.72 11.41 -46.03 -0.53 -5.25 16 20 C 0.21 2.41 8.89 101.05 0.90 3.31 16 21 O -0.31 -4.54 11.40 -45.70 -0.52 -5.07 16 22 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 23 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.14 1.77 6.29 -52.49 -0.33 1.44 16 26 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 28 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -32.98 286.79 -6.11 -39.09 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -4.02 Total: -3.71 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.89 Total: -14.32 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.24 Total: -15.58 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.98 -6.11 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.684 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds