Wall clock time and date at job start Mon Mar 30 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38695 * 119.98495 * 359.72652 * 3 2 1 5 5 C 1.38490 * 119.98806 * 179.76382 * 4 3 2 6 6 C 1.39304 * 119.87821 * 0.51377 * 5 4 3 7 7 C 1.38483 * 119.92238 * 359.73551 * 6 5 4 8 8 C 1.38262 * 120.09533 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.95803 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46888 * 265.01937 * 9 8 7 11 11 C 1.50701 * 109.47201 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99717 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00448 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99537 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00311 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46751 * 60.00383 * 15 13 11 17 17 H 1.48500 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46997 * 300.00520 * 15 13 11 19 19 O 1.36603 * 108.60862 * 179.74497 * 6 5 4 20 20 C 1.43983 * 105.47739 * 17.28586 * 19 6 5 21 21 O 1.36504 * 131.48334 * 180.17674 * 5 4 3 22 22 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00770 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.95182 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.46733 * 25.01596 * 9 8 7 28 28 H 1.09003 * 109.46894 * 145.01690 * 9 8 7 29 29 H 1.09003 * 109.46922 * 300.00070 * 10 9 8 30 30 H 1.08994 * 109.47312 * 59.99574 * 10 9 8 31 31 H 0.97002 * 119.99677 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.57094 * 91.42507 * 20 19 6 33 33 H 1.09003 * 110.57122 * 214.29161 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2906 2.3746 -0.0057 5 6 1.9191 3.6086 -0.0008 6 6 3.3104 3.6788 -0.0009 7 6 4.0607 2.5148 -0.0004 8 6 3.4310 1.2840 -0.0003 9 6 4.2506 0.0192 -0.0004 10 6 4.4227 -0.4768 -1.4374 11 6 5.2428 -1.7411 -1.4376 12 1 5.6054 -2.1497 -0.5059 13 6 5.5303 -2.3763 -2.6271 14 7 5.0892 -1.8785 -3.7616 15 14 6.5474 -3.9431 -2.6273 16 1 5.8553 -4.9825 -1.8238 17 1 6.7144 -4.4246 -4.0221 18 1 7.8815 -3.6672 -2.0363 19 8 3.6806 4.9937 -0.0013 20 6 2.5094 5.7227 0.4109 21 8 1.4183 4.8785 -0.0014 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2121 2.3179 -0.0098 26 1 5.1394 2.5686 -0.0009 27 1 5.2297 0.2209 0.4341 28 1 3.7416 -0.7435 0.5889 29 1 3.4435 -0.6783 -1.8719 30 1 4.9316 0.2860 -2.0266 31 1 5.2918 -2.3251 -4.5985 32 1 2.5025 5.8565 1.4926 33 1 2.4603 6.6867 -0.0956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:49 Heat of formation + Delta-G solvation = -103.227302 kcal Electronic energy + Delta-G solvation = -17977.497003 eV Core-core repulsion = 14968.758966 eV Total energy + Delta-G solvation = -3008.738037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.13122 -40.76237 -37.86358 -37.21811 -35.66956 -33.68180 -30.98818 -30.30819 -28.19860 -27.25317 -26.06585 -23.93782 -23.55008 -22.10449 -19.67485 -18.65925 -18.61619 -18.31866 -17.54937 -16.74363 -16.47516 -16.37208 -15.97413 -15.52585 -15.07962 -14.73087 -14.48605 -14.09300 -13.97011 -13.90320 -13.67370 -13.07044 -12.79841 -12.67426 -12.57655 -12.40421 -12.06742 -11.68526 -11.62328 -11.17337 -10.93807 -10.50374 -9.79052 -8.66598 -8.14458 -6.26331 0.08997 0.19540 1.42931 1.46679 1.54331 1.73988 2.35607 2.43615 2.52520 2.58082 3.18153 3.45733 3.78204 3.88011 4.03395 4.06988 4.21879 4.34144 4.42495 4.50237 4.57303 4.74475 4.76417 4.91328 4.95700 5.02228 5.10969 5.28163 5.42555 5.55662 5.82427 5.89454 6.02495 6.27672 6.44126 6.90261 7.42434 8.96949 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.005413 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.891701 B = 5171.947234 C = 5788.932983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.135 3.865 4 C -0.186 4.186 5 C 0.054 3.946 6 C -0.016 4.016 7 C -0.068 4.068 8 C -0.106 4.106 9 C -0.050 4.050 10 C 0.040 3.960 11 C -0.540 4.540 12 H 0.064 0.936 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.266 1.266 19 O -0.324 6.324 20 C 0.204 3.796 21 O -0.318 6.318 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.164 0.836 26 H 0.146 0.854 27 H 0.069 0.931 28 H 0.066 0.934 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.107 0.893 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 11.811 10.479 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.089 3.911 4 C -0.206 4.206 5 C 0.009 3.991 6 C -0.060 4.060 7 C -0.087 4.087 8 C -0.107 4.107 9 C -0.087 4.087 10 C 0.003 3.997 11 C -0.578 4.578 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.190 1.190 19 O -0.241 6.241 20 C 0.094 3.906 21 O -0.235 6.235 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.182 0.818 26 H 0.164 0.836 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.121 11.801 10.201 18.070 hybrid contribution 0.251 -0.375 -0.464 0.647 sum -8.871 11.426 9.737 17.437 Atomic orbital electron populations 1.23413 0.76480 1.05674 1.02439 1.86246 1.23491 1.25514 1.88230 1.18445 0.91335 0.84447 0.96910 1.20087 1.01581 0.87359 1.11529 1.19438 0.90689 0.86478 1.02514 1.19640 0.92256 0.85476 1.08675 1.19840 1.00658 0.87255 1.00941 1.19347 0.91519 0.95546 1.04333 1.20335 0.97730 0.92175 0.98478 1.18868 0.94807 0.94489 0.91545 1.21670 1.33089 1.09807 0.93263 0.91806 1.25990 0.97332 1.01360 0.95139 1.70120 1.47345 1.41737 0.98388 0.85488 0.79257 0.79089 0.77126 1.19073 1.20998 1.19032 1.87325 1.36993 1.14120 1.85695 1.26151 0.69246 0.93212 1.01991 1.87283 1.37275 1.13876 1.85048 0.92009 0.90533 0.86580 0.81836 0.83626 0.91207 0.91578 0.99225 0.99467 0.92887 0.87563 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -11.23 9.62 -93.35 -0.90 -12.13 16 3 C 0.13 4.79 6.66 22.48 0.15 4.93 16 4 C -0.19 -5.62 9.05 22.44 0.20 -5.42 16 5 C 0.05 1.66 7.15 22.59 0.16 1.82 16 6 C -0.02 -0.54 7.15 22.58 0.16 -0.38 16 7 C -0.07 -2.43 9.69 22.33 0.22 -2.22 16 8 C -0.11 -4.14 5.15 -19.76 -0.10 -4.24 16 9 C -0.05 -2.18 5.00 29.85 0.15 -2.04 16 10 C 0.04 2.21 4.95 29.85 0.15 2.36 16 11 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 12 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.94 -58.52 13.29 21.45 0.28 -58.24 16 15 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 O -0.32 -9.33 11.41 -77.27 -0.88 -10.21 16 20 C 0.20 3.98 8.89 113.37 1.01 4.98 16 21 O -0.32 -8.39 11.40 -76.09 -0.87 -9.26 16 22 H 0.06 1.29 7.65 -2.39 -0.02 1.28 16 23 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 24 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.16 3.86 6.29 -2.91 -0.02 3.84 16 26 H 0.15 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.07 2.85 8.05 -2.39 -0.02 2.83 16 28 H 0.07 2.86 7.68 -2.39 -0.02 2.85 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -72.48 286.79 4.68 -67.79 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.11 Total: 4.71 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.90 Total: -29.61 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.28 Total: -58.24 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -2.65 Total: -31.59 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.48 4.68 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.433 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds