Wall clock time and date at job start Mon Mar 30 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48495 * 109.47463 * 239.99949 * 3 2 1 5 5 H 1.48502 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46823 * 119.99832 * 3 2 1 7 7 C 1.37877 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46611 * 180.02562 * 9 7 2 11 11 C 1.38261 * 119.92035 * 264.99902 * 10 9 7 12 12 C 1.38305 * 120.25317 * 180.22758 * 11 10 9 13 13 C 1.38596 * 119.80781 * 359.50909 * 12 11 10 14 14 C 1.38557 * 120.10946 * 0.55333 * 13 12 11 15 15 C 1.38746 * 119.92851 * 85.02415 * 10 9 7 16 16 O 1.35994 * 120.18321 * 0.02562 * 15 10 9 17 17 O 1.36560 * 119.64055 * 179.65422 * 14 13 12 18 18 C 1.42915 * 115.92491 * 68.34435 * 17 14 13 19 19 C 1.52064 * 110.75378 * 275.62890 * 18 17 14 20 20 C 1.52071 * 112.36760 * 64.76127 * 19 18 17 21 21 O 1.36485 * 120.29388 * 180.26021 * 13 12 11 22 22 H 0.96995 * 120.00184 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47020 * 60.00688 * 9 7 2 24 24 H 1.09001 * 109.47145 * 300.00156 * 9 7 2 25 25 H 1.08002 * 119.87027 * 359.94194 * 11 10 9 26 26 H 1.08004 * 120.09419 * 179.74719 * 12 11 10 27 27 H 0.96695 * 114.00440 * 90.00601 * 16 15 10 28 28 H 1.08996 * 109.21666 * 35.95621 * 18 17 14 29 29 H 1.08995 * 109.21451 * 155.33972 * 18 17 14 30 30 H 1.09002 * 108.90105 * 185.50612 * 19 18 17 31 31 H 1.09004 * 108.90724 * 304.11067 * 19 18 17 32 32 H 1.08998 * 109.21194 * 55.52227 * 20 19 18 33 33 H 1.08993 * 109.21457 * 174.90398 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2304 -3.6445 -0.0015 11 6 2.6001 -4.2360 -1.1952 12 6 3.4948 -5.2907 -1.2026 13 6 4.0298 -5.7487 -0.0089 14 6 3.6608 -5.1594 1.1896 15 6 2.7586 -4.1034 1.1967 16 8 2.3947 -3.5227 2.3713 17 8 4.1884 -5.6230 2.3608 18 6 5.5843 -5.3855 2.5545 19 6 6.4135 -6.4677 1.8810 20 6 6.2577 -6.4588 0.3683 21 8 4.9176 -6.7853 -0.0051 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5563 -0.8920 24 1 0.6240 -2.5574 0.8880 25 1 2.1851 -3.8761 -2.1251 26 1 3.7787 -5.7535 -2.1362 27 1 1.6207 -3.9270 2.7868 28 1 5.8457 -4.4164 2.1294 29 1 5.8023 -5.3795 3.6224 30 1 7.4637 -6.3134 2.1288 31 1 6.1007 -7.4402 2.2611 32 1 6.5048 -5.4676 -0.0119 33 1 6.9389 -7.1900 -0.0667 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260300604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:48 Heat of formation + Delta-G solvation = -120.729565 kcal Electronic energy + Delta-G solvation = -18474.446144 eV Core-core repulsion = 15464.949151 eV Total energy + Delta-G solvation = -3009.496993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.92710 -39.58592 -38.49566 -37.06565 -35.35527 -33.89840 -32.01733 -30.34155 -28.56806 -27.34895 -25.11072 -23.64659 -22.50395 -22.12016 -19.73016 -18.82355 -18.45935 -18.09603 -17.31479 -16.60690 -16.51470 -16.37276 -15.57516 -15.36689 -15.03709 -14.98163 -14.39348 -14.11591 -13.74171 -13.51755 -13.15036 -12.75580 -12.56431 -12.48887 -12.43464 -11.91773 -11.84714 -11.53967 -11.45759 -11.30031 -10.77588 -10.58446 -9.51781 -9.29012 -8.18934 -6.30016 0.11168 0.18636 1.38711 1.41562 1.49393 2.27353 2.44513 2.49618 2.81205 3.12591 3.41824 3.72984 3.80640 4.09731 4.15722 4.22951 4.35275 4.39226 4.41521 4.47020 4.64864 4.78297 4.88182 5.07841 5.12258 5.22804 5.29858 5.33292 5.60283 5.73743 5.80716 6.12294 6.18260 6.51089 6.78870 6.89997 7.36708 8.90318 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.006178 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.846741 B = 4531.111704 C = 4717.350667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.046 0.954 9 C 0.067 3.933 10 C -0.083 4.083 11 C -0.103 4.103 12 C -0.115 4.115 13 C 0.054 3.946 14 C 0.029 3.971 15 C 0.092 3.908 16 O -0.492 6.492 17 O -0.333 6.333 18 C 0.049 3.951 19 C -0.178 4.178 20 C 0.048 3.952 21 O -0.330 6.330 22 H 0.265 0.735 23 H 0.013 0.987 24 H 0.009 0.991 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.396 0.604 28 H 0.045 0.955 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.524 -12.522 1.120 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.065 0.935 9 C 0.030 3.970 10 C -0.084 4.084 11 C -0.122 4.122 12 C -0.133 4.133 13 C 0.010 3.990 14 C -0.015 4.015 15 C 0.047 3.953 16 O -0.303 6.303 17 O -0.250 6.250 18 C -0.026 4.026 19 C -0.215 4.215 20 C -0.026 4.026 21 O -0.247 6.247 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.027 0.973 25 H 0.161 0.839 26 H 0.180 0.820 27 H 0.253 0.747 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.742 -12.331 1.133 17.768 hybrid contribution -0.270 1.017 0.322 1.100 sum 12.472 -11.314 1.455 16.902 Atomic orbital electron populations 1.70049 1.07412 1.27913 1.51447 1.25819 0.95760 1.02743 0.94741 0.85576 0.78423 0.78566 0.78954 1.19046 1.20324 1.19988 1.21208 0.92662 0.91256 1.50669 0.93532 1.17933 0.92475 0.90166 0.96377 1.20839 0.98114 0.96715 0.92693 1.21076 0.97918 0.95475 0.97683 1.21263 0.98401 0.96116 0.97544 1.18944 0.96381 0.91832 0.91805 1.19558 1.00512 0.94933 0.86536 1.18405 0.99123 0.91362 0.86408 1.84800 1.51843 1.59377 1.34296 1.86272 1.25815 1.77820 1.35081 1.22908 0.78712 0.97892 1.03054 1.22445 1.02692 1.00542 0.95829 1.22968 0.81326 1.02869 0.95470 1.86313 1.19603 1.30559 1.88272 0.92585 0.96824 0.97322 0.83913 0.81952 0.74690 0.93656 0.86121 0.85889 0.90090 0.92680 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.52 -30.05 9.09 25.60 0.23 -29.82 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.07 3.58 4.82 29.10 0.14 3.72 16 10 C -0.08 -3.69 5.09 -19.74 -0.10 -3.79 16 11 C -0.10 -3.86 9.67 22.29 0.22 -3.64 16 12 C -0.12 -3.67 10.00 22.37 0.22 -3.44 16 13 C 0.05 1.84 5.73 22.43 0.13 1.97 16 14 C 0.03 1.10 5.74 22.50 0.13 1.23 16 15 C 0.09 3.93 6.69 22.55 0.15 4.08 16 16 O -0.49 -21.03 12.45 -80.02 -1.00 -22.03 16 17 O -0.33 -11.55 9.96 -75.69 -0.75 -12.30 16 18 C 0.05 1.24 6.51 71.67 0.47 1.70 16 19 C -0.18 -3.32 5.92 29.98 0.18 -3.14 16 20 C 0.05 0.99 6.51 71.68 0.47 1.46 16 21 O -0.33 -9.71 10.16 -84.31 -0.86 -10.57 16 22 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.01 0.74 8.05 -2.39 -0.02 0.73 16 24 H 0.01 0.49 7.69 -2.39 -0.02 0.47 16 25 H 0.14 4.92 8.06 -2.91 -0.02 4.89 16 26 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.40 13.44 9.06 -74.06 -0.67 12.76 16 28 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.18 7.93 -2.39 -0.02 1.16 16 33 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.78 283.35 2.86 -67.93 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.46 Total: 14.40 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 2.69 Total: -28.78 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -2.61 Total: -44.90 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.78 2.86 -67.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260300604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.801 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds