Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46766 * 239.99871 * 3 2 1 5 5 H 1.48495 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47112 * 120.00065 * 3 2 1 7 7 C 1.37868 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00605 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99986 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47534 * 299.99467 * 9 7 2 11 11 C 1.50706 * 109.47116 * 179.97438 * 9 7 2 12 12 C 1.38265 * 119.97461 * 299.99825 * 11 9 7 13 13 C 1.38171 * 120.02561 * 179.97438 * 12 11 9 14 14 C 1.38481 * 119.97455 * 0.02562 * 13 12 11 15 15 F 1.35102 * 120.02485 * 179.97438 * 14 13 12 16 16 C 1.38436 * 119.94953 * 359.97438 * 14 13 12 17 17 C 1.50699 * 120.01199 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47152 * 180.02562 * 17 16 14 19 19 C 1.38216 * 119.97126 * 0.28056 * 16 14 13 20 20 C 1.53002 * 109.47562 * 60.00094 * 9 7 2 21 21 C 1.53003 * 117.49985 * 248.75258 * 20 9 7 22 22 C 1.52995 * 117.50603 * 180.08971 * 20 9 7 23 23 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.98790 * 359.97438 * 12 11 9 25 25 H 1.08002 * 120.01341 * 179.97438 * 13 12 11 26 26 H 1.08997 * 109.47198 * 60.00055 * 17 16 14 27 27 H 1.09008 * 109.47393 * 299.99771 * 17 16 14 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 29 29 H 1.08004 * 119.98659 * 179.72605 * 19 16 14 30 30 H 1.09007 * 115.54626 * 34.41183 * 20 9 7 31 31 H 1.09001 * 117.49454 * 359.97438 * 21 20 9 32 32 H 1.08998 * 117.50113 * 145.01270 * 21 20 9 33 33 H 1.08998 * 117.50230 * 214.98072 * 22 20 9 34 34 H 1.09003 * 117.49682 * 359.97049 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4990 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 2.2305 -3.6445 0.0005 12 6 3.1346 -3.7804 -1.0367 13 6 4.0333 -4.8298 -1.0375 14 6 4.0280 -5.7461 0.0008 15 9 4.9060 -6.7729 0.0008 16 6 3.1224 -5.6090 1.0388 17 6 3.1158 -6.6049 2.1698 18 8 2.0988 -6.2517 3.1096 19 6 2.2208 -4.5614 1.0348 20 6 0.3720 -2.5805 -1.2490 21 6 -1.1438 -2.5129 -1.0520 22 6 -0.4795 -3.8382 -1.4331 23 1 -0.4850 0.8400 -0.0004 24 1 3.1383 -3.0659 -1.8466 25 1 4.7391 -4.9360 -1.8481 26 1 4.0867 -6.5987 2.6651 27 1 2.9153 -7.6012 1.7755 28 1 2.0373 -6.8507 3.8663 29 1 1.5112 -4.4568 1.8423 30 1 0.7842 -2.1162 -2.1450 31 1 -1.5147 -2.4107 -0.0321 32 1 -1.7288 -2.0045 -1.8185 33 1 -0.6277 -4.2013 -2.4501 34 1 -0.4130 -4.6080 -0.6642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260303793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -56.070173 kcal Electronic energy + Delta-G solvation = -18136.808896 eV Core-core repulsion = 15142.488535 eV Total energy + Delta-G solvation = -2994.320361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.49646 -38.96555 -36.88808 -35.95191 -32.73715 -31.36242 -30.71608 -27.19201 -25.65180 -23.43542 -21.85066 -21.23374 -20.77709 -18.79982 -17.54807 -16.88569 -16.44276 -15.48195 -15.29817 -15.06510 -14.48349 -14.46593 -14.03106 -13.52851 -13.23810 -13.10492 -12.63103 -12.24234 -11.71264 -11.55968 -11.19544 -10.93795 -10.68880 -10.53800 -10.46190 -10.25289 -10.01366 -9.82174 -9.69400 -8.76149 -8.74266 -8.33936 -8.29583 -7.70485 -6.00722 -4.08347 1.76829 1.86789 3.31145 3.36034 3.39084 4.23143 4.23388 4.44856 4.77481 5.06993 5.11972 5.28175 5.35028 5.38630 5.50963 5.84030 5.92320 5.97367 6.14834 6.20189 6.35352 6.50655 6.54326 6.74234 6.77893 6.89640 7.04574 7.07566 7.23328 7.26571 7.50603 7.58076 7.68789 7.80406 7.96111 8.32665 8.93522 9.55970 11.04847 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.006896 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.874602 B = 4059.479498 C = 4338.809483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.105 3.895 10 H 0.038 0.962 11 C -0.034 4.034 12 C -0.080 4.080 13 C -0.156 4.156 14 C 0.066 3.934 15 F -0.153 7.153 16 C -0.133 4.133 17 C 0.126 3.874 18 O -0.563 6.563 19 C -0.080 4.080 20 C -0.082 4.082 21 C -0.136 4.136 22 C -0.227 4.227 23 H 0.260 0.740 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.378 0.622 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -10.505 1.082 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.087 3.913 10 H 0.056 0.944 11 C -0.034 4.034 12 C -0.098 4.098 13 C -0.175 4.175 14 C 0.047 3.953 15 F -0.132 7.132 16 C -0.134 4.134 17 C 0.049 3.951 18 O -0.368 6.368 19 C -0.098 4.098 20 C -0.101 4.101 21 C -0.173 4.173 22 C -0.264 4.264 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.143 0.857 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.225 0.775 29 H 0.152 0.848 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.389 -9.928 0.655 10.511 hybrid contribution 0.751 0.339 0.292 0.874 sum 4.140 -9.589 0.948 10.488 Atomic orbital electron populations 1.70012 1.05638 1.26453 1.48864 1.24944 0.94856 0.98813 0.94839 0.86710 0.79649 0.83310 0.78632 1.20322 1.21358 1.20316 1.20953 0.92714 0.89447 1.52414 0.92423 1.17530 0.90658 0.89717 0.93378 0.94357 1.20662 0.95684 0.95180 0.91849 1.20978 0.93693 0.96034 0.99110 1.21003 1.02017 0.96145 0.98360 1.17252 0.92127 0.88416 0.97548 1.91401 1.67602 1.57427 1.96775 1.19558 0.98703 0.99429 0.95732 1.20660 0.90600 0.95364 0.88484 1.86524 1.57005 1.56361 1.36887 1.20860 0.97723 0.92439 0.98765 1.22183 0.92379 0.95585 0.99908 1.22443 0.96948 0.96803 1.01102 1.23077 1.10471 0.92564 1.00276 0.93022 0.85024 0.85669 0.92672 0.92726 0.77496 0.84814 0.89888 0.89581 0.91164 0.91090 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.64 11.43 55.43 0.63 -23.00 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.53 8.22 -34.45 -0.28 -13.81 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.11 2.51 2.10 -92.92 -0.20 2.32 16 10 H 0.04 1.00 7.63 -51.93 -0.40 0.60 16 11 C -0.03 -0.70 4.39 -104.62 -0.46 -1.16 16 12 C -0.08 -1.54 8.82 -39.60 -0.35 -1.89 16 13 C -0.16 -2.68 10.03 -39.52 -0.40 -3.08 16 14 C 0.07 1.13 7.25 -39.42 -0.29 0.85 16 15 F -0.15 -2.48 16.80 2.25 0.04 -2.44 16 16 C -0.13 -2.34 5.89 -104.56 -0.62 -2.95 16 17 C 0.13 1.76 7.02 36.01 0.25 2.01 16 18 O -0.56 -7.66 12.14 -35.23 -0.43 -8.09 16 19 C -0.08 -1.57 9.00 -39.60 -0.36 -1.93 16 20 C -0.08 -1.84 3.86 -90.62 -0.35 -2.19 16 21 C -0.14 -2.94 9.04 -26.69 -0.24 -3.18 16 22 C -0.23 -4.48 9.87 -26.70 -0.26 -4.74 16 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.13 2.49 8.05 -52.49 -0.42 2.06 16 25 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.38 2.99 9.12 45.56 0.42 3.41 16 29 H 0.13 2.68 6.89 -52.48 -0.36 2.32 16 30 H 0.08 1.95 8.11 -51.93 -0.42 1.53 16 31 H 0.09 1.96 8.05 -51.93 -0.42 1.55 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -28.19 294.55 -7.65 -35.84 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.67 Total: 5.57 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -3.64 Total: -28.02 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.63 Total: -23.00 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.43 Total: -8.09 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.19 -7.65 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.235 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds