Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99665 * 2 1 4 4 H 1.48503 * 109.46766 * 239.99871 * 3 2 1 5 5 H 1.48495 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47112 * 120.00065 * 3 2 1 7 7 C 1.37868 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00605 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99986 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47534 * 299.99467 * 9 7 2 11 11 C 1.50706 * 109.47116 * 179.97438 * 9 7 2 12 12 C 1.38265 * 119.97461 * 299.99825 * 11 9 7 13 13 C 1.38171 * 120.02561 * 179.97438 * 12 11 9 14 14 C 1.38481 * 119.97455 * 0.02562 * 13 12 11 15 15 F 1.35102 * 120.02485 * 179.97438 * 14 13 12 16 16 C 1.38436 * 119.94953 * 359.97438 * 14 13 12 17 17 C 1.50699 * 120.01199 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47152 * 180.02562 * 17 16 14 19 19 C 1.38216 * 119.97126 * 0.28056 * 16 14 13 20 20 C 1.53002 * 109.47562 * 60.00094 * 9 7 2 21 21 C 1.53003 * 117.49985 * 248.75258 * 20 9 7 22 22 C 1.52995 * 117.50603 * 180.08971 * 20 9 7 23 23 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.98790 * 359.97438 * 12 11 9 25 25 H 1.08002 * 120.01341 * 179.97438 * 13 12 11 26 26 H 1.08997 * 109.47198 * 60.00055 * 17 16 14 27 27 H 1.09008 * 109.47393 * 299.99771 * 17 16 14 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 29 29 H 1.08004 * 119.98659 * 179.72605 * 19 16 14 30 30 H 1.09007 * 115.54626 * 34.41183 * 20 9 7 31 31 H 1.09001 * 117.49454 * 359.97438 * 21 20 9 32 32 H 1.08998 * 117.50113 * 145.01270 * 21 20 9 33 33 H 1.08998 * 117.50230 * 214.98072 * 22 20 9 34 34 H 1.09003 * 117.49682 * 359.97049 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4990 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 2.2305 -3.6445 0.0005 12 6 3.1346 -3.7804 -1.0367 13 6 4.0333 -4.8298 -1.0375 14 6 4.0280 -5.7461 0.0008 15 9 4.9060 -6.7729 0.0008 16 6 3.1224 -5.6090 1.0388 17 6 3.1158 -6.6049 2.1698 18 8 2.0988 -6.2517 3.1096 19 6 2.2208 -4.5614 1.0348 20 6 0.3720 -2.5805 -1.2490 21 6 -1.1438 -2.5129 -1.0520 22 6 -0.4795 -3.8382 -1.4331 23 1 -0.4850 0.8400 -0.0004 24 1 3.1383 -3.0659 -1.8466 25 1 4.7391 -4.9360 -1.8481 26 1 4.0867 -6.5987 2.6651 27 1 2.9153 -7.6012 1.7755 28 1 2.0373 -6.8507 3.8663 29 1 1.5112 -4.4568 1.8423 30 1 0.7842 -2.1162 -2.1450 31 1 -1.5147 -2.4107 -0.0321 32 1 -1.7288 -2.0045 -1.8185 33 1 -0.6277 -4.2013 -2.4501 34 1 -0.4130 -4.6080 -0.6642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260303793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -71.765789 kcal Electronic energy + Delta-G solvation = -18137.489509 eV Core-core repulsion = 15142.488535 eV Total energy + Delta-G solvation = -2995.000974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.81464 -40.43792 -38.28719 -37.33074 -34.66124 -32.85642 -32.23004 -28.91957 -26.92859 -25.31560 -23.27741 -22.87453 -22.35326 -20.50335 -18.78413 -18.41397 -18.08565 -16.74786 -16.74286 -16.65821 -16.25306 -15.61189 -15.55656 -14.92870 -14.80485 -14.69992 -14.19744 -13.91006 -13.30602 -13.00999 -12.82511 -12.72454 -12.41296 -12.17464 -12.09203 -11.79280 -11.65054 -11.50129 -11.22288 -10.62287 -10.54191 -10.20514 -9.71275 -9.20442 -8.02445 -6.15995 0.33671 0.42212 1.44571 1.45411 1.52236 2.45805 2.80078 3.19668 3.23754 3.37832 3.42397 3.85656 4.08169 4.17802 4.27785 4.38472 4.49849 4.51132 4.53445 4.65426 4.69605 4.92743 5.04126 5.10897 5.30502 5.30673 5.34483 5.48459 5.52513 5.58758 5.68753 5.86337 6.04223 6.14285 6.38162 6.90586 6.94185 7.50328 9.01235 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.006896 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.874602 B = 4059.479498 C = 4338.809483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.111 3.889 10 H 0.002 0.998 11 C -0.054 4.054 12 C -0.090 4.090 13 C -0.146 4.146 14 C 0.069 3.931 15 F -0.142 7.142 16 C -0.133 4.133 17 C 0.127 3.873 18 O -0.584 6.584 19 C -0.094 4.094 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.193 4.193 23 H 0.259 0.741 24 H 0.129 0.871 25 H 0.156 0.844 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.402 0.598 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 -11.942 0.645 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.092 3.908 10 H 0.020 0.980 11 C -0.054 4.054 12 C -0.108 4.108 13 C -0.164 4.164 14 C 0.050 3.950 15 F -0.121 7.121 16 C -0.134 4.134 17 C 0.049 3.951 18 O -0.393 6.393 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.179 4.179 22 C -0.230 4.230 23 H 0.068 0.932 24 H 0.147 0.853 25 H 0.174 0.826 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.253 0.747 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.676 -11.387 0.234 12.312 hybrid contribution 0.382 0.706 0.482 0.936 sum 5.058 -10.682 0.717 11.840 Atomic orbital electron populations 1.70128 1.06617 1.26855 1.49582 1.25605 0.95640 1.01602 0.94782 0.85816 0.78518 0.79901 0.78579 1.19694 1.21130 1.20350 1.21231 0.92603 0.90904 1.52102 0.93099 1.17295 0.90873 0.90253 0.92340 0.97999 1.20464 0.96314 0.95119 0.93508 1.20935 0.94177 0.97019 0.98665 1.21240 1.01396 0.94833 0.98982 1.17273 0.91958 0.88497 0.97294 1.91433 1.67111 1.56844 1.96695 1.19914 0.97436 0.99126 0.96900 1.20741 0.91593 0.94967 0.87766 1.86477 1.57030 1.57788 1.38042 1.20744 0.98685 0.93478 0.98303 1.21979 0.92526 0.98077 0.98895 1.22362 0.96521 0.98789 1.00271 1.23054 1.06986 0.91306 1.01623 0.93230 0.85314 0.82649 0.90854 0.90523 0.74698 0.86152 0.91101 0.91546 0.90550 0.88488 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.65 11.43 21.44 0.25 -49.40 16 2 C 0.02 1.34 5.30 84.65 0.45 1.79 16 3 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.53 -28.47 8.22 25.60 0.21 -28.26 16 8 H 0.05 2.73 7.60 -2.91 -0.02 2.70 16 9 C 0.11 5.46 2.10 -12.29 -0.03 5.43 16 10 H 0.00 0.11 7.63 -2.39 -0.02 0.09 16 11 C -0.05 -2.29 4.39 -19.86 -0.09 -2.38 16 12 C -0.09 -3.39 8.82 22.26 0.20 -3.19 16 13 C -0.15 -4.65 10.03 22.31 0.22 -4.43 16 14 C 0.07 2.19 7.25 22.37 0.16 2.35 16 15 F -0.14 -4.08 16.80 44.97 0.76 -3.32 16 16 C -0.13 -4.42 5.89 -19.82 -0.12 -4.54 16 17 C 0.13 3.19 7.02 71.24 0.50 3.69 16 18 O -0.58 -14.92 12.14 -148.98 -1.81 -16.73 16 19 C -0.09 -3.71 9.00 22.26 0.20 -3.51 16 20 C -0.10 -4.40 3.86 -10.79 -0.04 -4.44 16 21 C -0.14 -6.25 9.04 30.62 0.28 -5.98 16 22 C -0.19 -7.47 9.87 30.62 0.30 -7.17 16 23 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 24 H 0.13 4.85 8.05 -2.91 -0.02 4.83 16 25 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 28 H 0.40 5.48 9.12 -74.06 -0.68 4.80 16 29 H 0.12 4.99 6.89 -2.91 -0.02 4.97 16 30 H 0.07 3.39 8.11 -2.38 -0.02 3.37 16 31 H 0.07 3.15 8.05 -2.39 -0.02 3.14 16 32 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -60.66 294.55 3.90 -56.76 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.43 Total: 18.31 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 2.25 Total: -50.63 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.25 Total: -49.40 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.81 Total: -16.73 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.76 Total: -3.32 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -60.66 3.90 -56.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.010 kcal (2) G-P(sol) polarization free energy of solvation -60.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds