Wall clock time and date at job start Mon Mar 30 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46688 * 2 1 4 4 C 1.50693 * 109.47133 * 240.00304 * 2 1 3 5 5 H 1.08001 * 119.99884 * 265.38696 * 4 2 1 6 6 C 1.37880 * 120.00297 * 85.38857 * 4 2 1 7 7 N 1.31511 * 120.00021 * 180.91869 * 6 4 2 8 8 Si 1.86801 * 119.99863 * 0.91316 * 6 4 2 9 9 H 1.48501 * 109.46860 * 86.40988 * 8 6 4 10 10 H 1.48493 * 109.47256 * 206.40917 * 8 6 4 11 11 H 1.48506 * 109.46992 * 326.40989 * 8 6 4 12 12 C 1.52996 * 109.47160 * 119.99899 * 2 1 3 13 13 H 1.09002 * 115.56032 * 34.31379 * 12 2 1 14 14 C 1.53000 * 117.50227 * 248.62383 * 12 2 1 15 15 C 1.53004 * 60.00119 * 252.51318 * 14 12 2 16 16 H 1.09004 * 117.49705 * 252.51440 * 15 14 12 17 17 C 1.50691 * 117.50293 * 107.48727 * 15 14 12 18 18 C 1.38237 * 120.00569 * 351.39797 * 17 15 14 19 19 C 1.38224 * 120.01274 * 179.97438 * 18 17 15 20 20 C 1.38261 * 120.02538 * 0.03824 * 19 18 17 21 21 C 1.38193 * 120.01504 * 359.97438 * 20 19 18 22 22 C 1.38327 * 120.00728 * 171.11757 * 17 15 14 23 23 Cl 1.73600 * 120.01449 * 359.97438 * 22 17 15 24 24 H 1.08998 * 109.47260 * 65.28302 * 1 2 3 25 25 H 1.09003 * 109.47283 * 185.28355 * 1 2 3 26 26 H 1.09007 * 109.47228 * 305.28787 * 1 2 3 27 27 H 0.97009 * 119.99922 * 179.97438 * 7 6 4 28 28 H 1.09000 * 117.49863 * 145.02379 * 14 12 2 29 29 H 1.09001 * 117.49573 * 0.02562 * 14 12 2 30 30 H 1.08002 * 119.99514 * 359.97438 * 18 17 15 31 31 H 1.08007 * 119.98525 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.99280 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.00524 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.2832 -1.7597 -1.1835 6 6 2.1716 -0.0205 -2.4161 7 7 2.5928 -0.6447 -3.4944 8 14 1.7619 1.8005 -2.4910 9 1 2.9523 2.5925 -2.0899 10 1 1.3701 2.1632 -3.8766 11 1 0.6377 2.0934 -1.5659 12 6 2.0400 -0.7212 1.2492 13 1 1.4310 -1.5583 1.5905 14 6 2.7418 0.1226 2.3152 15 6 3.5550 -0.8280 1.4342 16 1 3.9427 -1.7355 1.8973 17 6 4.4306 -0.2148 0.3721 18 6 4.3454 1.1383 0.1023 19 6 5.1489 1.7010 -0.8715 20 6 6.0376 0.9109 -1.5769 21 6 6.1235 -0.4420 -1.3082 22 6 5.3239 -1.0047 -0.3290 23 17 5.4371 -2.7025 0.0147 24 1 -0.3634 0.4297 -0.9335 25 1 -0.3634 -1.0233 0.0946 26 1 -0.3634 0.5937 0.8389 27 1 2.6904 -0.1594 -4.3287 28 1 2.5946 -0.1594 3.3577 29 1 2.8399 1.1917 2.1266 30 1 3.6510 1.7559 0.6525 31 1 5.0823 2.7584 -1.0817 32 1 6.6649 1.3511 -2.3380 33 1 6.8180 -1.0589 -1.8590 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:02 Heat of formation + Delta-G solvation = 37.424691 kcal Electronic energy + Delta-G solvation = -16801.257995 eV Core-core repulsion = 14239.328251 eV Total energy + Delta-G solvation = -2561.929745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.27824 -36.78774 -35.67526 -33.04817 -30.94096 -30.02667 -29.64450 -25.00496 -23.42589 -22.34094 -21.83788 -19.99711 -18.76543 -16.73935 -16.26297 -15.29435 -14.75346 -14.29134 -13.97323 -13.45761 -13.18380 -12.78941 -12.42496 -12.33311 -11.95423 -11.53396 -11.26818 -11.07759 -10.93514 -10.62517 -10.58177 -10.34353 -10.06877 -9.95240 -9.71708 -9.55878 -9.20786 -8.70392 -8.41965 -8.01583 -7.63885 -5.92986 -3.87521 1.94737 2.03906 2.90751 3.32230 3.41907 3.43702 4.25150 4.53076 4.70912 5.22397 5.39958 5.41615 5.56824 5.60472 5.72105 5.79893 6.01025 6.05654 6.19500 6.35684 6.42830 6.44633 6.55432 6.60689 6.64796 6.91985 6.92900 7.00611 7.07712 7.20886 7.25281 7.53410 7.55408 7.88466 8.67025 9.14400 9.71252 11.20419 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.012961 C = 0.010541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.502057 B = 2159.825387 C = 2655.645566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.033 3.967 3 H 0.030 0.970 4 C -0.490 4.490 5 H 0.072 0.928 6 C 0.083 3.917 7 N -0.896 5.896 8 Si 0.850 3.150 9 H -0.266 1.266 10 H -0.296 1.296 11 H -0.264 1.264 12 C -0.095 4.095 13 H 0.093 0.907 14 C -0.194 4.194 15 C -0.116 4.116 16 H 0.105 0.895 17 C 0.015 3.985 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.014 4.014 23 Cl -0.087 7.087 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.020 0.980 27 H 0.258 0.742 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 2.720 8.001 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.091 0.909 6 C -0.118 4.118 7 N -0.535 5.535 8 Si 0.678 3.322 9 H -0.192 1.192 10 H -0.223 1.223 11 H -0.189 1.189 12 C -0.113 4.113 13 H 0.111 0.889 14 C -0.231 4.231 15 C -0.134 4.134 16 H 0.123 0.877 17 C 0.014 3.986 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.040 4.040 23 Cl -0.058 7.058 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.038 2.586 7.830 9.663 hybrid contribution -0.324 0.809 -0.426 0.970 sum 4.714 3.395 7.404 9.411 Atomic orbital electron populations 1.22057 0.99047 0.99653 0.98828 1.18840 0.91827 0.95395 0.92484 0.95226 1.20777 1.42461 0.97923 0.91592 0.90940 1.24815 0.94563 0.96792 0.95629 1.69892 1.47178 1.35945 1.00448 0.87353 0.79761 0.88167 0.76927 1.19163 1.22300 1.18927 1.22547 0.91767 1.00028 0.96954 0.88875 1.23230 1.06472 0.97466 0.95886 1.20972 0.93905 0.99984 0.98519 0.87702 1.18538 0.92708 0.92366 0.94952 1.20732 0.98722 0.94110 0.98560 1.20971 0.96180 0.99416 0.96258 1.20763 1.00098 0.93298 1.00118 1.20746 0.99437 0.95160 0.96491 1.20392 1.00267 0.83726 0.99615 1.98297 1.97562 1.15484 1.94457 0.93668 0.93819 0.96120 0.93158 0.89590 0.89161 0.86296 0.86910 0.86493 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.74 37.16 0.32 -2.59 16 2 C 0.03 0.74 1.28 -91.78 -0.12 0.63 16 3 H 0.03 0.67 3.82 -51.92 -0.20 0.47 16 4 C -0.49 -12.96 6.88 -34.44 -0.24 -13.20 16 5 H 0.07 2.17 8.05 -52.49 -0.42 1.75 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.85 20.86 25.51 -169.99 -4.34 16.52 16 9 H -0.27 -6.15 6.04 56.52 0.34 -5.81 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.26 -6.26 5.91 56.52 0.33 -5.93 16 12 C -0.09 -1.83 5.14 -90.62 -0.47 -2.30 16 13 H 0.09 1.73 8.11 -51.93 -0.42 1.31 16 14 C -0.19 -3.16 9.51 -26.73 -0.25 -3.42 16 15 C -0.12 -2.15 5.46 -91.77 -0.50 -2.65 16 16 H 0.10 1.85 7.15 -51.93 -0.37 1.48 16 17 C 0.02 0.30 3.74 -104.59 -0.39 -0.09 16 18 C -0.10 -2.01 7.11 -39.59 -0.28 -2.29 16 19 C -0.11 -2.06 8.91 -39.58 -0.35 -2.42 16 20 C -0.12 -2.28 10.05 -39.59 -0.40 -2.67 16 21 C -0.10 -1.91 9.83 -39.55 -0.39 -2.30 16 22 C -0.01 -0.27 6.31 -39.50 -0.25 -0.52 16 23 Cl -0.09 -1.62 27.41 -51.86 -1.42 -3.04 16 24 H 0.04 1.01 6.37 -51.93 -0.33 0.68 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.44 6.09 -51.93 -0.32 1.13 16 30 H 0.12 2.18 5.17 -52.49 -0.27 1.91 16 31 H 0.11 1.89 8.01 -52.48 -0.42 1.47 16 32 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -28.92 276.00 -8.36 -37.28 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.13 Total: 2.64 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -3.41 Total: -31.61 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.34 Total: 16.52 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.42 Total: -3.04 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.92 -8.36 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.709 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds