Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46688 * 2 1 4 4 C 1.50693 * 109.47133 * 240.00304 * 2 1 3 5 5 H 1.08001 * 119.99884 * 265.38696 * 4 2 1 6 6 C 1.37880 * 120.00297 * 85.38857 * 4 2 1 7 7 N 1.31511 * 120.00021 * 180.91869 * 6 4 2 8 8 Si 1.86801 * 119.99863 * 0.91316 * 6 4 2 9 9 H 1.48501 * 109.46860 * 86.40988 * 8 6 4 10 10 H 1.48493 * 109.47256 * 206.40917 * 8 6 4 11 11 H 1.48506 * 109.46992 * 326.40989 * 8 6 4 12 12 C 1.52996 * 109.47160 * 119.99899 * 2 1 3 13 13 H 1.09002 * 115.56032 * 34.31379 * 12 2 1 14 14 C 1.53000 * 117.50227 * 248.62383 * 12 2 1 15 15 C 1.53004 * 60.00119 * 252.51318 * 14 12 2 16 16 H 1.09004 * 117.49705 * 252.51440 * 15 14 12 17 17 C 1.50691 * 117.50293 * 107.48727 * 15 14 12 18 18 C 1.38237 * 120.00569 * 351.39797 * 17 15 14 19 19 C 1.38224 * 120.01274 * 179.97438 * 18 17 15 20 20 C 1.38261 * 120.02538 * 0.03824 * 19 18 17 21 21 C 1.38193 * 120.01504 * 359.97438 * 20 19 18 22 22 C 1.38327 * 120.00728 * 171.11757 * 17 15 14 23 23 Cl 1.73600 * 120.01449 * 359.97438 * 22 17 15 24 24 H 1.08998 * 109.47260 * 65.28302 * 1 2 3 25 25 H 1.09003 * 109.47283 * 185.28355 * 1 2 3 26 26 H 1.09007 * 109.47228 * 305.28787 * 1 2 3 27 27 H 0.97009 * 119.99922 * 179.97438 * 7 6 4 28 28 H 1.09000 * 117.49863 * 145.02379 * 14 12 2 29 29 H 1.09001 * 117.49573 * 0.02562 * 14 12 2 30 30 H 1.08002 * 119.99514 * 359.97438 * 18 17 15 31 31 H 1.08007 * 119.98525 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.99280 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.00524 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.2832 -1.7597 -1.1835 6 6 2.1716 -0.0205 -2.4161 7 7 2.5928 -0.6447 -3.4944 8 14 1.7619 1.8005 -2.4910 9 1 2.9523 2.5925 -2.0899 10 1 1.3701 2.1632 -3.8766 11 1 0.6377 2.0934 -1.5659 12 6 2.0400 -0.7212 1.2492 13 1 1.4310 -1.5583 1.5905 14 6 2.7418 0.1226 2.3152 15 6 3.5550 -0.8280 1.4342 16 1 3.9427 -1.7355 1.8973 17 6 4.4306 -0.2148 0.3721 18 6 4.3454 1.1383 0.1023 19 6 5.1489 1.7010 -0.8715 20 6 6.0376 0.9109 -1.5769 21 6 6.1235 -0.4420 -1.3082 22 6 5.3239 -1.0047 -0.3290 23 17 5.4371 -2.7025 0.0147 24 1 -0.3634 0.4297 -0.9335 25 1 -0.3634 -1.0233 0.0946 26 1 -0.3634 0.5937 0.8389 27 1 2.6904 -0.1594 -4.3287 28 1 2.5946 -0.1594 3.3577 29 1 2.8399 1.1917 2.1266 30 1 3.6510 1.7559 0.6525 31 1 5.0823 2.7584 -1.0817 32 1 6.6649 1.3511 -2.3380 33 1 6.8180 -1.0589 -1.8590 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = 22.905348 kcal Electronic energy + Delta-G solvation = -16801.887601 eV Core-core repulsion = 14239.328251 eV Total energy + Delta-G solvation = -2562.559351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73801 -38.27710 -37.15780 -34.94752 -32.79440 -31.48104 -31.13208 -26.95959 -24.86281 -23.93325 -23.34135 -21.44584 -20.36797 -18.74258 -17.78763 -16.75036 -16.33974 -16.07178 -15.47100 -15.05869 -14.64698 -14.41007 -14.24550 -13.97888 -13.66850 -12.97763 -12.95806 -12.66946 -12.48220 -12.23373 -12.13253 -11.95239 -11.74891 -11.57062 -11.42923 -11.06245 -10.99472 -10.54481 -10.37456 -9.50048 -9.11656 -8.05582 -6.02075 0.46866 0.57680 1.39643 1.41729 1.44258 1.49590 2.50211 2.80634 3.26653 3.34795 3.82560 3.98722 4.16173 4.19650 4.32491 4.38508 4.56626 4.65392 4.74071 4.79217 4.93494 4.97772 5.04655 5.15803 5.22774 5.26816 5.41758 5.49209 5.51411 5.63545 5.74278 5.85737 5.88413 6.11796 6.55890 6.99604 7.59688 9.11253 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.012961 C = 0.010541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.502057 B = 2159.825387 C = 2655.645566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 H 0.033 0.967 4 C -0.470 4.470 5 H 0.025 0.975 6 C 0.036 3.964 7 N -0.946 5.946 8 Si 0.895 3.105 9 H -0.241 1.241 10 H -0.312 1.312 11 H -0.247 1.247 12 C -0.117 4.117 13 H 0.098 0.902 14 C -0.157 4.157 15 C -0.129 4.129 16 H 0.108 0.892 17 C -0.001 4.001 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.037 4.037 23 Cl -0.086 7.086 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.254 0.746 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 4.626 9.801 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 H 0.051 0.949 4 C -0.508 4.508 5 H 0.043 0.957 6 C -0.161 4.161 7 N -0.588 5.588 8 Si 0.721 3.279 9 H -0.165 1.165 10 H -0.240 1.240 11 H -0.171 1.171 12 C -0.136 4.136 13 H 0.116 0.884 14 C -0.194 4.194 15 C -0.147 4.147 16 H 0.126 0.874 17 C -0.002 4.002 18 C -0.132 4.132 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.063 4.063 23 Cl -0.057 7.057 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.749 4.498 9.671 11.675 hybrid contribution -0.210 0.115 -0.971 1.000 sum 4.539 4.613 8.700 10.843 Atomic orbital electron populations 1.21982 0.97948 1.00244 0.99277 1.18785 0.92639 0.95237 0.91929 0.94856 1.20842 1.40848 0.95832 0.93289 0.95660 1.25419 0.94845 1.00606 0.95203 1.70059 1.49998 1.37619 1.01107 0.86607 0.81022 0.83942 0.76364 1.16527 1.23955 1.17115 1.22414 0.92376 1.01418 0.97363 0.88402 1.23321 1.02221 0.97292 0.96533 1.21040 0.93164 1.01259 0.99275 0.87410 1.18802 0.92998 0.92886 0.95488 1.20978 0.99211 0.94045 0.99004 1.21327 0.95899 1.00624 0.95965 1.21143 1.00233 0.92988 1.00429 1.21054 0.99781 0.96072 0.96591 1.20705 1.01101 0.84112 1.00399 1.98284 1.97581 1.15377 1.94474 0.95355 0.93834 0.92891 0.93708 0.86381 0.88280 0.85009 0.84726 0.83903 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.74 71.98 0.63 -4.82 16 2 C 0.03 1.40 1.28 -11.54 -0.01 1.39 16 3 H 0.03 1.41 3.82 -2.38 -0.01 1.40 16 4 C -0.47 -24.94 6.88 25.60 0.18 -24.76 16 5 H 0.03 1.55 8.05 -2.91 -0.02 1.53 16 6 C 0.04 1.97 5.47 84.66 0.46 2.44 16 7 N -0.95 -57.74 13.96 21.45 0.30 -57.44 16 8 Si 0.89 41.89 25.51 68.60 1.75 43.64 16 9 H -0.24 -10.21 6.04 99.48 0.60 -9.61 16 10 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 11 H -0.25 -10.81 5.91 99.48 0.59 -10.22 16 12 C -0.12 -4.29 5.14 -10.79 -0.06 -4.34 16 13 H 0.10 3.44 8.11 -2.39 -0.02 3.42 16 14 C -0.16 -4.51 9.51 30.60 0.29 -4.22 16 15 C -0.13 -4.57 5.46 -11.54 -0.06 -4.63 16 16 H 0.11 3.68 7.15 -2.38 -0.02 3.66 16 17 C 0.00 -0.04 3.74 -19.85 -0.07 -0.11 16 18 C -0.11 -4.19 7.11 22.27 0.16 -4.04 16 19 C -0.12 -4.22 8.91 22.27 0.20 -4.02 16 20 C -0.13 -4.55 10.05 22.26 0.22 -4.33 16 21 C -0.12 -4.42 9.83 22.29 0.22 -4.20 16 22 C -0.04 -1.48 6.31 22.32 0.14 -1.33 16 23 Cl -0.09 -3.24 27.41 -2.72 -0.07 -3.32 16 24 H 0.03 1.19 6.37 -2.39 -0.02 1.17 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 28 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.10 2.70 6.09 -2.39 -0.01 2.69 16 30 H 0.13 4.38 5.17 -2.91 -0.02 4.36 16 31 H 0.13 4.05 8.01 -2.91 -0.02 4.02 16 32 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -62.66 276.00 5.15 -57.51 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.88 Total: 16.60 kcal Atomic # 6 Polarization: -59.28 SS G_CDS: 2.29 Total: -56.99 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.30 Total: -57.44 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.75 Total: 43.64 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.07 Total: -3.32 kcal Total: -62.66 5.15 -57.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.411 kcal (2) G-P(sol) polarization free energy of solvation -62.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds