Wall clock time and date at job start Mon Mar 30 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 C 1.50698 * 109.47056 * 239.99496 * 2 1 3 5 5 H 1.08000 * 120.00134 * 239.99620 * 4 2 1 6 6 C 1.37878 * 119.99871 * 60.00931 * 4 2 1 7 7 N 1.31521 * 120.00078 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47589 * 119.99308 * 8 6 4 11 11 H 1.48501 * 109.46684 * 239.99813 * 8 6 4 12 12 C 1.53001 * 109.46789 * 119.99698 * 2 1 3 13 13 H 1.09004 * 115.55041 * 85.67154 * 12 2 1 14 14 C 1.52993 * 117.51908 * 231.37166 * 12 2 1 15 15 C 1.52992 * 59.99998 * 107.48371 * 14 12 2 16 16 H 1.09003 * 117.51861 * 252.51480 * 15 14 12 17 17 C 1.50701 * 117.49921 * 107.49296 * 15 14 12 18 18 C 1.38240 * 119.98862 * 351.63245 * 17 15 14 19 19 C 1.38212 * 120.01559 * 180.30575 * 18 17 15 20 20 C 1.38361 * 119.98341 * 359.43561 * 19 18 17 21 21 Cl 1.73605 * 120.01019 * 180.25981 * 20 19 18 22 22 C 1.38346 * 119.97282 * 0.28612 * 20 19 18 23 23 C 1.38211 * 119.98791 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47258 * 300.00130 * 1 2 3 25 25 H 1.09000 * 109.46816 * 60.00181 * 1 2 3 26 26 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00154 * 179.97438 * 7 6 4 28 28 H 1.08999 * 117.50005 * 359.97438 * 14 12 2 29 29 H 1.09007 * 117.49717 * 214.97652 * 14 12 2 30 30 H 1.08004 * 119.99413 * 0.02562 * 18 17 15 31 31 H 1.08002 * 120.01126 * 179.72142 * 19 18 17 32 32 H 1.08002 * 120.00319 * 180.02562 * 22 20 19 33 33 H 1.08003 * 119.99330 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1463 -2.2873 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8163 12 6 2.0399 -0.7212 1.2493 13 1 2.1267 -1.8045 1.1643 14 6 3.0741 0.0047 2.1120 15 6 1.6356 -0.1495 2.6096 16 1 1.0063 0.7405 2.6146 17 6 1.3877 -1.1270 3.7294 18 6 2.4016 -1.9673 4.1502 19 6 2.1730 -2.8684 5.1730 20 6 0.9325 -2.9212 5.7836 21 17 0.6466 -4.0482 7.0728 22 6 -0.0800 -2.0760 5.3659 23 6 0.1482 -1.1791 4.3394 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7090 1.1614 -3.4844 28 1 3.3918 0.9962 1.7894 29 1 3.8413 -0.6010 2.5945 30 1 3.3712 -1.9228 3.6766 31 1 2.9637 -3.5280 5.4986 32 1 -1.0483 -2.1165 5.8425 33 1 -0.6422 -0.5195 4.0130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:13 Heat of formation + Delta-G solvation = 24.609284 kcal Electronic energy + Delta-G solvation = -15361.336809 eV Core-core repulsion = 12798.851346 eV Total energy + Delta-G solvation = -2562.485462 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59566 -37.28384 -36.23299 -33.41813 -31.04013 -30.70849 -29.20790 -25.20339 -23.66421 -22.80589 -22.01601 -20.27486 -18.88528 -17.33072 -16.31507 -15.47191 -15.04918 -14.65871 -14.27591 -13.58439 -13.46978 -13.33467 -12.73987 -12.08640 -12.01348 -11.73409 -11.53633 -11.20693 -11.15068 -10.91116 -10.83833 -10.74316 -10.41026 -10.22207 -9.88416 -9.44776 -9.09645 -8.99379 -8.82526 -8.35277 -8.09569 -5.99218 -4.05037 1.20992 1.34550 2.12392 3.29344 3.37554 3.41317 3.64362 4.42840 4.57290 4.84890 4.90262 4.95455 5.30520 5.38503 5.40199 5.52302 5.70485 5.73849 5.81884 6.01792 6.19337 6.24971 6.32212 6.56621 6.64096 6.79636 6.82679 6.88185 6.95159 7.20988 7.36307 7.73023 7.96474 8.13556 8.44860 8.97864 9.59540 11.06810 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.004210 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.424549 B = 6648.903363 C = 6758.823836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.028 0.972 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.090 4.090 13 H 0.092 0.908 14 C -0.177 4.177 15 C -0.145 4.145 16 H 0.110 0.890 17 C -0.021 4.021 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.050 4.050 21 Cl -0.085 7.085 22 C -0.107 4.107 23 C -0.107 4.107 24 H 0.007 0.993 25 H 0.081 0.919 26 H 0.025 0.975 27 H 0.259 0.741 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -4.700 15.366 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.046 0.954 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.108 4.108 13 H 0.110 0.890 14 C -0.214 4.214 15 C -0.163 4.163 16 H 0.128 0.872 17 C -0.021 4.021 18 C -0.132 4.132 19 C -0.126 4.126 20 C -0.077 4.077 21 Cl -0.056 7.056 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.026 0.974 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.038 -4.692 15.343 16.044 hybrid contribution 0.244 -0.578 -0.714 0.950 sum 0.282 -5.269 14.629 15.551 Atomic orbital electron populations 1.21747 0.98406 0.98990 0.99890 1.18367 0.92525 0.95096 0.89066 0.95384 1.21186 1.30797 1.12248 0.90360 0.92618 1.24957 0.95143 0.95025 0.98963 1.69900 1.36943 1.23043 1.23169 0.86561 0.78637 0.79733 0.83224 1.19800 1.21076 1.21076 1.22895 0.98563 0.99071 0.90241 0.88962 1.23109 0.90723 1.02774 1.04802 1.21235 0.99660 1.00228 0.95212 0.87189 1.19482 0.92994 0.95075 0.94566 1.21091 0.99882 0.95525 0.96745 1.20985 0.95511 0.99430 0.96629 1.20839 0.96158 0.96210 0.94466 1.98345 1.96453 1.61139 1.49667 1.20985 0.98378 0.95524 0.97727 1.20975 0.97084 0.98852 0.95583 0.97386 0.90043 0.95615 0.93116 0.88724 0.89677 0.84915 0.85317 0.85263 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.81 37.16 0.33 -2.81 16 2 C 0.07 1.64 2.45 -91.77 -0.23 1.41 16 3 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 4 C -0.51 -13.68 8.54 -34.44 -0.29 -13.97 16 5 H 0.06 1.49 7.73 -52.49 -0.41 1.08 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C -0.09 -1.78 4.73 -90.63 -0.43 -2.21 16 13 H 0.09 1.88 8.09 -51.93 -0.42 1.46 16 14 C -0.18 -2.97 9.50 -26.74 -0.25 -3.23 16 15 C -0.15 -2.42 5.24 -91.78 -0.48 -2.90 16 16 H 0.11 1.84 7.61 -51.93 -0.40 1.44 16 17 C -0.02 -0.31 5.61 -104.62 -0.59 -0.90 16 18 C -0.11 -1.56 9.30 -39.59 -0.37 -1.93 16 19 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 20 C -0.05 -0.63 6.32 -39.50 -0.25 -0.88 16 21 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 22 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 23 C -0.11 -1.45 9.74 -39.59 -0.39 -1.83 16 24 H 0.01 0.15 7.29 -51.93 -0.38 -0.23 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.09 1.61 8.05 -51.93 -0.42 1.19 16 29 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 30 H 0.13 1.68 6.01 -52.48 -0.32 1.37 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -27.58 291.90 -9.52 -37.10 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.20 Total: 0.64 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -3.82 Total: -31.15 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.63 Total: -24.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.58 -9.52 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.709 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds