Wall clock time and date at job start Mon Mar 30 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 C 1.50698 * 109.47056 * 239.99496 * 2 1 3 5 5 H 1.08000 * 120.00134 * 239.99620 * 4 2 1 6 6 C 1.37878 * 119.99871 * 60.00931 * 4 2 1 7 7 N 1.31521 * 120.00078 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47589 * 119.99308 * 8 6 4 11 11 H 1.48501 * 109.46684 * 239.99813 * 8 6 4 12 12 C 1.53001 * 109.46789 * 119.99698 * 2 1 3 13 13 H 1.09004 * 115.55041 * 85.67154 * 12 2 1 14 14 C 1.52993 * 117.51908 * 231.37166 * 12 2 1 15 15 C 1.52992 * 59.99998 * 107.48371 * 14 12 2 16 16 H 1.09003 * 117.51861 * 252.51480 * 15 14 12 17 17 C 1.50701 * 117.49921 * 107.49296 * 15 14 12 18 18 C 1.38240 * 119.98862 * 351.63245 * 17 15 14 19 19 C 1.38212 * 120.01559 * 180.30575 * 18 17 15 20 20 C 1.38361 * 119.98341 * 359.43561 * 19 18 17 21 21 Cl 1.73605 * 120.01019 * 180.25981 * 20 19 18 22 22 C 1.38346 * 119.97282 * 0.28612 * 20 19 18 23 23 C 1.38211 * 119.98791 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47258 * 300.00130 * 1 2 3 25 25 H 1.09000 * 109.46816 * 60.00181 * 1 2 3 26 26 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00154 * 179.97438 * 7 6 4 28 28 H 1.08999 * 117.50005 * 359.97438 * 14 12 2 29 29 H 1.09007 * 117.49717 * 214.97652 * 14 12 2 30 30 H 1.08004 * 119.99413 * 0.02562 * 18 17 15 31 31 H 1.08002 * 120.01126 * 179.72142 * 19 18 17 32 32 H 1.08002 * 120.00319 * 180.02562 * 22 20 19 33 33 H 1.08003 * 119.99330 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1463 -2.2873 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8163 12 6 2.0399 -0.7212 1.2493 13 1 2.1267 -1.8045 1.1643 14 6 3.0741 0.0047 2.1120 15 6 1.6356 -0.1495 2.6096 16 1 1.0063 0.7405 2.6146 17 6 1.3877 -1.1270 3.7294 18 6 2.4016 -1.9673 4.1502 19 6 2.1730 -2.8684 5.1730 20 6 0.9325 -2.9212 5.7836 21 17 0.6466 -4.0482 7.0728 22 6 -0.0800 -2.0760 5.3659 23 6 0.1482 -1.1791 4.3394 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7090 1.1614 -3.4844 28 1 3.3918 0.9962 1.7894 29 1 3.8413 -0.6010 2.5945 30 1 3.3712 -1.9228 3.6766 31 1 2.9637 -3.5280 5.4986 32 1 -1.0483 -2.1165 5.8425 33 1 -0.6422 -0.5195 4.0130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:13 Heat of formation + Delta-G solvation = 13.139683 kcal Electronic energy + Delta-G solvation = -15361.834168 eV Core-core repulsion = 12798.851346 eV Total energy + Delta-G solvation = -2562.982822 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71100 -38.59398 -37.27209 -35.29864 -32.31652 -32.02808 -30.65517 -27.23397 -24.89776 -24.12259 -23.38625 -21.54742 -20.50841 -18.64731 -17.99004 -16.86956 -16.33200 -16.17224 -15.44871 -15.09201 -14.58472 -14.45171 -14.36274 -13.80711 -13.37950 -13.07248 -12.93967 -12.77930 -12.62217 -12.58429 -12.27435 -12.14761 -12.08009 -11.73056 -11.41679 -11.09072 -10.80436 -10.61899 -10.37985 -9.97773 -9.28168 -8.06922 -6.19776 0.16709 0.35964 1.17172 1.41118 1.43459 1.54292 2.44146 2.58369 3.17645 3.27672 3.71400 3.86305 3.98015 4.14690 4.25129 4.29582 4.40895 4.60158 4.73692 4.81861 4.90454 5.00335 5.06994 5.17003 5.17423 5.28638 5.33792 5.39933 5.52268 5.64443 5.69628 5.85998 5.99430 6.14423 6.42104 6.91123 7.48151 8.97882 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.004210 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.424549 B = 6648.903363 C = 6758.823836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.067 3.933 3 H 0.000 1.000 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 C -0.115 4.115 13 H 0.085 0.915 14 C -0.165 4.165 15 C -0.121 4.121 16 H 0.106 0.894 17 C -0.043 4.043 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.054 4.054 21 Cl -0.072 7.072 22 C -0.108 4.108 23 C -0.112 4.112 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.260 0.740 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -5.820 16.735 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 H 0.018 0.982 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C -0.133 4.133 13 H 0.103 0.897 14 C -0.202 4.202 15 C -0.139 4.139 16 H 0.124 0.876 17 C -0.043 4.043 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.080 4.080 21 Cl -0.044 7.044 22 C -0.127 4.127 23 C -0.130 4.130 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.408 -5.817 16.723 17.710 hybrid contribution 0.108 -0.255 -1.049 1.085 sum 0.516 -6.072 15.673 16.816 Atomic orbital electron populations 1.21586 0.98310 0.98552 0.99534 1.18248 0.92658 0.93697 0.90565 0.98226 1.21559 1.30690 1.12261 0.91796 0.93008 1.25719 0.95414 0.95753 1.01846 1.70029 1.37911 1.24253 1.23738 0.85598 0.78140 0.78777 0.79705 1.19161 1.20778 1.20681 1.22489 1.02242 0.98328 0.90272 0.89664 1.23178 0.91511 1.02290 1.03176 1.21126 0.99273 0.99882 0.93655 0.87558 1.19433 0.94205 0.95764 0.94901 1.21209 0.99952 0.95395 0.97014 1.21209 0.96123 0.99273 0.96071 1.21029 0.96264 0.96179 0.94556 1.98353 1.96401 1.60617 1.48998 1.21205 0.99301 0.94898 0.97266 1.21132 0.96866 0.99260 0.95786 0.95035 0.92993 0.95906 0.93124 0.89289 0.87130 0.84165 0.83333 0.83282 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.81 71.98 0.63 -5.24 16 2 C 0.07 3.29 2.45 -11.54 -0.03 3.27 16 3 H 0.00 -0.02 7.90 -2.39 -0.02 -0.04 16 4 C -0.52 -28.76 8.54 25.60 0.22 -28.54 16 5 H 0.05 2.80 7.73 -2.91 -0.02 2.78 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 C -0.12 -4.56 4.73 -10.80 -0.05 -4.61 16 13 H 0.09 3.48 8.09 -2.38 -0.02 3.46 16 14 C -0.16 -5.37 9.50 30.59 0.29 -5.08 16 15 C -0.12 -3.92 5.24 -11.54 -0.06 -3.98 16 16 H 0.11 3.48 7.61 -2.39 -0.02 3.46 16 17 C -0.04 -1.20 5.61 -19.86 -0.11 -1.32 16 18 C -0.12 -2.96 9.30 22.26 0.21 -2.75 16 19 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 20 C -0.05 -1.22 6.32 22.32 0.14 -1.07 16 21 Cl -0.07 -1.46 28.96 -2.72 -0.08 -1.53 16 22 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 23 C -0.11 -2.83 9.74 22.26 0.22 -2.62 16 24 H 0.03 1.31 7.29 -2.39 -0.02 1.29 16 25 H 0.05 2.80 6.07 -2.39 -0.01 2.78 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.09 2.99 8.05 -2.39 -0.02 2.97 16 29 H 0.11 3.00 6.17 -2.38 -0.01 2.99 16 30 H 0.14 3.22 6.01 -2.91 -0.02 3.20 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -58.91 291.90 5.63 -53.28 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.10 Total: 10.84 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 2.34 Total: -55.32 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.24 Total: -52.86 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -58.91 5.63 -53.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.416 kcal (2) G-P(sol) polarization free energy of solvation -58.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds