Wall clock time and date at job start Mon Mar 30 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47291 * 2 1 4 4 C 1.50700 * 109.47419 * 239.99591 * 2 1 3 5 5 H 1.07994 * 120.00222 * 240.00483 * 4 2 1 6 6 C 1.37877 * 119.99477 * 60.00227 * 4 2 1 7 7 N 1.31517 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99701 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47313 * 59.99775 * 8 6 4 10 10 H 1.48495 * 109.47022 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46958 * 299.99494 * 8 6 4 12 12 C 1.53005 * 109.47111 * 119.99826 * 2 1 3 13 13 H 1.09002 * 115.55067 * 85.58292 * 12 2 1 14 14 C 1.53005 * 117.49765 * 231.25305 * 12 2 1 15 15 C 1.52999 * 117.51737 * 299.88326 * 12 2 1 16 16 H 1.08995 * 117.49797 * 145.02727 * 15 12 2 17 17 C 1.50701 * 117.49906 * 0.02562 * 15 12 2 18 18 C 1.38243 * 119.98987 * 299.73269 * 17 15 12 19 19 C 1.38218 * 120.01186 * 179.72725 * 18 17 15 20 20 C 1.38353 * 119.98769 * 0.54176 * 19 18 17 21 21 Cl 1.73591 * 120.01304 * 179.75364 * 20 19 18 22 22 C 1.38356 * 119.97183 * 359.72651 * 20 19 18 23 23 C 1.38216 * 119.98781 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47569 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47140 * 300.00498 * 1 2 3 26 26 H 1.08999 * 109.47491 * 60.00043 * 1 2 3 27 27 H 0.96998 * 119.99970 * 179.97438 * 7 6 4 28 28 H 1.09004 * 117.49360 * 215.00124 * 14 12 2 29 29 H 1.08995 * 117.49694 * 359.97438 * 14 12 2 30 30 H 1.07999 * 119.99219 * 359.97438 * 18 17 15 31 31 H 1.07999 * 120.00033 * 180.27223 * 19 18 17 32 32 H 1.08002 * 120.00241 * 180.02562 * 22 20 19 33 33 H 1.08002 * 119.99256 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0076 10 1 1.8260 -0.4208 -5.2203 11 1 3.8064 -1.1210 -4.0080 12 6 2.0399 -0.7212 1.2493 13 1 2.1252 -1.8046 1.1648 14 6 3.0763 0.0040 2.1101 15 6 1.6382 -0.1482 2.6099 16 1 1.4591 -0.8546 3.4204 17 6 0.7697 1.0833 2.6172 18 6 1.2188 2.2491 2.0253 19 6 0.4203 3.3773 2.0268 20 6 -0.8240 3.3430 2.6307 21 17 -1.8248 4.7614 2.6386 22 6 -1.2707 2.1776 3.2278 23 6 -0.4734 1.0485 3.2211 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7088 1.1612 -3.4844 28 1 3.8433 -0.6023 2.5919 29 1 3.3950 0.9947 1.7862 30 1 2.1921 2.2772 1.5581 31 1 0.7695 4.2867 1.5605 32 1 -2.2421 2.1501 3.6990 33 1 -0.8221 0.1386 3.6868 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:15 Heat of formation + Delta-G solvation = 19.768911 kcal Electronic energy + Delta-G solvation = -16033.630936 eV Core-core repulsion = 13470.935579 eV Total energy + Delta-G solvation = -2562.695357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94485 -38.45896 -37.14614 -35.21626 -32.01783 -31.81419 -31.10768 -27.11966 -24.88805 -23.93146 -23.52237 -21.58784 -20.34669 -18.53604 -17.85013 -16.79910 -16.43411 -16.01183 -15.59352 -15.09160 -14.61862 -14.36959 -14.26981 -13.94632 -13.31975 -13.09190 -12.92625 -12.77295 -12.50468 -12.42553 -12.16454 -12.10595 -11.99770 -11.66778 -11.42207 -10.99832 -10.76015 -10.56887 -10.33252 -9.86986 -9.14044 -8.03026 -6.16278 0.25095 0.43770 1.21425 1.42424 1.43015 1.50410 2.45205 2.63936 3.21848 3.31564 3.78130 3.92039 4.02275 4.18443 4.27277 4.36973 4.45765 4.63597 4.82890 4.86931 4.95310 5.07577 5.10419 5.16442 5.27372 5.35668 5.38746 5.46733 5.58262 5.66933 5.75464 5.94007 6.06509 6.21217 6.46549 6.95760 7.51009 9.00008 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.006501 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.463863 B = 4306.035863 C = 5032.695784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.074 3.926 3 H 0.008 0.992 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.916 5.916 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.128 4.128 13 H 0.093 0.907 14 C -0.168 4.168 15 C -0.121 4.121 16 H 0.132 0.868 17 C -0.030 4.030 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.054 4.054 21 Cl -0.076 7.076 22 C -0.110 4.110 23 C -0.111 4.111 24 H 0.014 0.986 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.257 0.743 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 2.542 12.867 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 H 0.026 0.974 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.146 4.146 13 H 0.111 0.889 14 C -0.205 4.205 15 C -0.139 4.139 16 H 0.150 0.850 17 C -0.030 4.030 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.080 4.080 21 Cl -0.048 7.048 22 C -0.129 4.129 23 C -0.129 4.129 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.307 2.785 12.729 13.232 hybrid contribution 0.208 -0.111 -1.367 1.388 sum -2.099 2.674 11.361 11.859 Atomic orbital electron populations 1.21738 0.98751 0.97989 1.00007 1.18154 0.92242 0.93981 0.90045 0.97433 1.21577 1.30738 1.12329 0.92061 0.93079 1.25690 0.95482 0.95763 1.01709 1.70038 1.37760 1.24193 1.23578 0.85775 0.78831 0.78814 0.79205 1.19815 1.21318 1.19664 1.22593 1.02306 0.98694 0.90974 0.88852 1.23164 0.91640 1.02133 1.03536 1.21273 0.95982 0.97447 0.99193 0.85044 1.19305 0.94747 0.93449 0.95485 1.21103 1.00496 0.92574 0.98922 1.21099 0.93295 0.99609 0.99485 1.20949 0.93316 0.89433 1.04307 1.98333 1.69081 1.39770 1.97591 1.21212 1.01066 0.90926 0.99687 1.21138 0.92958 0.98812 0.99982 0.96709 0.93783 0.93857 0.93356 0.86946 0.89647 0.86065 0.84970 0.82989 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.62 71.98 0.62 -5.59 16 2 C 0.07 3.61 1.70 -11.54 -0.02 3.59 16 3 H 0.01 0.40 5.93 -2.39 -0.01 0.39 16 4 C -0.53 -28.95 8.54 25.60 0.22 -28.73 16 5 H 0.05 2.74 7.73 -2.91 -0.02 2.72 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C -0.13 -4.94 5.09 -10.79 -0.05 -5.00 16 13 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 14 C -0.17 -5.35 9.51 30.60 0.29 -5.06 16 15 C -0.12 -3.73 5.95 -11.54 -0.07 -3.80 16 16 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 17 C -0.03 -0.94 3.19 -19.86 -0.06 -1.01 16 18 C -0.11 -3.86 7.46 22.27 0.17 -3.70 16 19 C -0.12 -3.75 9.83 22.29 0.22 -3.53 16 20 C -0.05 -1.58 6.32 22.33 0.14 -1.44 16 21 Cl -0.08 -2.03 28.96 -2.72 -0.08 -2.10 16 22 C -0.11 -2.95 9.83 22.29 0.22 -2.73 16 23 C -0.11 -3.04 8.78 22.27 0.20 -2.85 16 24 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.04 1.90 4.32 -2.39 -0.01 1.89 16 26 H 0.04 2.40 6.07 -2.39 -0.01 2.39 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 29 H 0.09 2.86 6.08 -2.39 -0.01 2.84 16 30 H 0.12 4.36 5.19 -2.91 -0.02 4.34 16 31 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -60.23 281.60 5.62 -54.62 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.11 Total: 13.56 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 2.31 Total: -58.74 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.24 Total: -53.25 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.10 kcal Total: -60.23 5.62 -54.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.387 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds