Wall clock time and date at job start Mon Mar 30 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 C 1.50701 * 109.47346 * 120.00348 * 2 1 3 5 5 H 1.07997 * 120.00337 * 119.99987 * 4 2 1 6 6 C 1.37884 * 119.99628 * 300.00177 * 4 2 1 7 7 N 1.31510 * 119.99941 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99579 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47424 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47012 * 119.99893 * 8 6 4 11 11 H 1.48508 * 109.46928 * 239.99296 * 8 6 4 12 12 N 1.46506 * 109.46858 * 240.00056 * 2 1 3 13 13 C 1.38775 * 119.99588 * 85.00203 * 12 2 1 14 14 N 1.30411 * 126.38458 * 359.97438 * 13 12 2 15 15 O 1.41332 * 109.62492 * 180.02562 * 14 13 12 16 16 C 1.34942 * 109.47543 * 0.02562 * 15 14 13 17 17 C 1.40260 * 107.24308 * 359.97438 * 16 15 14 18 18 C 1.39545 * 119.94327 * 180.02562 * 17 16 15 19 19 C 1.37678 * 119.74219 * 0.02562 * 18 17 16 20 20 C 1.38723 * 120.35782 * 359.93046 * 19 18 17 21 21 C 1.38005 * 120.54834 * 0.10127 * 20 19 18 22 22 F 1.35100 * 120.05136 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.46769 * 299.99486 * 1 2 3 24 24 H 1.08998 * 109.46883 * 60.00068 * 1 2 3 25 25 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99766 * 180.02562 * 7 6 4 27 27 H 0.96994 * 119.99686 * 264.99471 * 12 2 1 28 28 H 1.08007 * 120.12865 * 179.72509 * 18 17 16 29 29 H 1.08000 * 119.82326 * 179.97438 * 19 18 17 30 30 H 1.08005 * 119.72763 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.1476 -2.2864 3.6036 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 2.1509 0.0018 -2.3916 14 7 1.8781 1.2615 -2.5903 15 8 2.1413 1.5974 -3.9376 16 6 2.5916 0.5073 -4.5934 17 6 2.6243 -0.5488 -3.6709 18 6 3.0547 -1.8133 -4.0748 19 6 3.4460 -2.0173 -5.3789 20 6 3.4132 -0.9737 -6.2922 21 6 2.9905 0.2824 -5.9071 22 9 2.9630 1.2917 -6.8048 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7096 1.1617 3.4844 27 1 2.2491 -1.6317 -1.1526 28 1 3.0853 -2.6276 -3.3658 29 1 3.7798 -2.9953 -5.6927 30 1 3.7221 -1.1452 -7.3128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:40 Heat of formation + Delta-G solvation = -0.283997 kcal Electronic energy + Delta-G solvation = -17467.345170 eV Core-core repulsion = 14371.903536 eV Total energy + Delta-G solvation = -3095.441635 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.96441 -42.57425 -38.57764 -38.13438 -35.22163 -33.09547 -31.23402 -31.02456 -30.19226 -27.36118 -24.58727 -23.93460 -23.17530 -21.58702 -19.55509 -18.80340 -18.38105 -17.41298 -17.38317 -17.03970 -16.37750 -16.22996 -16.15349 -15.45487 -15.20246 -14.54197 -14.32918 -14.10449 -13.40756 -13.05991 -13.05151 -12.97154 -12.80669 -12.63544 -12.51404 -12.23014 -12.17867 -11.94736 -11.13313 -10.62911 -10.08640 -9.81330 -9.02232 -8.21024 -6.38764 -0.40557 0.08438 1.29671 1.44354 1.45232 1.51457 1.58340 2.15820 2.43794 2.45401 3.00650 3.10524 3.29290 3.71028 3.81621 3.97711 4.16300 4.54130 4.63113 4.73851 4.89217 4.96514 5.01334 5.09030 5.21257 5.35293 5.57608 5.61913 5.73222 5.93934 6.08662 6.40499 6.65173 7.01325 7.33773 8.85701 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.042174 B = 0.005026 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.751884 B = 5569.142723 C = 5995.166026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.279 3.721 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.663 5.663 13 C 0.373 3.627 14 N -0.407 5.407 15 O -0.127 6.127 16 C 0.029 3.971 17 C -0.188 4.188 18 C -0.041 4.041 19 C -0.111 4.111 20 C -0.073 4.073 21 C 0.060 3.940 22 F -0.142 7.142 23 H 0.069 0.931 24 H 0.011 0.989 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.420 0.580 28 H 0.168 0.832 29 H 0.195 0.805 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 -10.675 -15.129 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.176 3.824 3 H 0.020 0.980 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.304 5.304 13 C 0.101 3.899 14 N -0.179 5.179 15 O -0.130 6.130 16 C -0.025 4.025 17 C -0.193 4.193 18 C -0.060 4.060 19 C -0.129 4.129 20 C -0.092 4.092 21 C 0.039 3.961 22 F -0.121 7.121 23 H 0.088 0.912 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.259 0.741 28 H 0.185 0.815 29 H 0.212 0.788 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.202 -9.229 -14.515 17.970 hybrid contribution 0.144 -0.168 0.744 0.776 sum 5.346 -9.397 -13.771 17.508 Atomic orbital electron populations 1.21970 0.98205 0.99775 0.99695 1.18530 0.91121 0.91764 0.80992 0.97998 1.21507 1.32771 1.13809 0.90374 0.90458 1.25789 0.94758 0.95539 1.02330 1.70051 1.36871 1.23854 1.24729 0.85253 0.78075 0.78512 0.78228 1.18149 1.21119 1.20441 1.44483 1.68885 1.12536 1.04457 1.21558 0.89811 0.90498 0.88009 1.80442 1.34725 1.13581 0.89159 1.89136 1.75092 1.30003 1.18772 1.20674 0.98492 0.88855 0.94502 1.20468 1.11719 0.97597 0.89508 1.21256 0.93143 0.93371 0.98269 1.21415 0.99889 1.00968 0.90598 1.21652 0.95924 0.88123 1.03522 1.16928 1.09424 0.87844 0.81925 1.91483 1.94954 1.59619 1.66055 0.91188 0.96948 0.93809 0.92440 0.74117 0.81500 0.78780 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.28 71.98 0.67 -6.16 16 2 C 0.28 14.06 2.73 44.25 0.12 14.18 16 3 H 0.00 0.13 7.83 -2.39 -0.02 0.11 16 4 C -0.55 -27.99 8.73 25.60 0.22 -27.77 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.66 11.32 21.45 0.24 -51.41 16 8 Si 0.97 40.93 29.54 68.60 2.03 42.95 16 9 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 10 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.66 -27.09 5.23 -322.26 -1.68 -28.77 16 13 C 0.37 15.36 8.12 135.84 1.10 16.46 16 14 N -0.41 -19.46 12.29 -51.04 -0.63 -20.09 16 15 O -0.13 -5.65 12.06 28.68 0.35 -5.31 16 16 C 0.03 1.03 7.45 22.98 0.17 1.20 16 17 C -0.19 -6.03 6.35 -20.15 -0.13 -6.16 16 18 C -0.04 -0.81 10.09 22.45 0.23 -0.59 16 19 C -0.11 -1.45 10.02 22.25 0.22 -1.22 16 20 C -0.07 -1.16 10.00 22.33 0.22 -0.94 16 21 C 0.06 1.61 7.31 22.43 0.16 1.77 16 22 F -0.14 -4.10 17.27 44.97 0.78 -3.32 16 23 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.42 14.06 8.66 -92.71 -0.80 13.26 16 28 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 29 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 30 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.21 273.47 4.91 -64.31 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.38 Total: 9.57 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 3.44 Total: -7.93 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -2.07 Total: -100.28 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: 0.35 Total: -5.31 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -69.21 4.91 -64.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.025 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds