Wall clock time and date at job start Mon Mar 30 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47340 * 270.00278 * 3 2 1 5 5 H 1.48509 * 109.46953 * 29.99644 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99988 * 3 2 1 7 7 C 1.37875 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 186.09184 * 7 2 1 9 9 C 1.50704 * 120.00130 * 6.09741 * 7 2 1 10 10 H 1.08999 * 109.46603 * 335.65062 * 9 7 2 11 11 C 1.50692 * 109.47278 * 95.65101 * 9 7 2 12 12 C 1.38224 * 120.01147 * 59.97880 * 11 9 7 13 13 C 1.38223 * 120.02189 * 180.02562 * 12 11 9 14 14 C 1.50700 * 119.97100 * 180.02562 * 13 12 11 15 15 O 1.42901 * 109.47444 * 90.00661 * 14 13 12 16 16 C 1.38268 * 120.05414 * 359.97438 * 13 12 11 17 17 C 1.38170 * 120.02759 * 359.97438 * 16 13 12 18 18 C 1.38435 * 120.01442 * 240.00145 * 11 9 7 19 19 F 1.35108 * 120.02659 * 359.69870 * 18 11 9 20 20 C 1.52998 * 109.47026 * 215.65730 * 9 7 2 21 21 C 1.52995 * 117.50212 * 134.06631 * 20 9 7 22 22 C 1.53002 * 117.50376 * 65.39910 * 20 9 7 23 23 H 0.96999 * 120.00455 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.98810 * 0.02562 * 12 11 9 25 25 H 1.09007 * 109.47176 * 210.00466 * 14 13 12 26 26 H 1.08997 * 109.47503 * 330.00072 * 14 13 12 27 27 H 0.96695 * 114.00115 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.98350 * 180.02562 * 16 13 12 29 29 H 1.07999 * 120.01856 * 180.02562 * 17 16 13 30 30 H 1.09008 * 115.54582 * 279.73541 * 20 9 7 31 31 H 1.08994 * 117.49881 * 359.97438 * 21 20 9 32 32 H 1.08999 * 117.49833 * 145.02240 * 21 20 9 33 33 H 1.08991 * 117.50208 * 214.98016 * 22 20 9 34 34 H 1.08999 * 117.49441 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0799 -1.1966 0.0998 9 6 1.2574 -2.4956 -0.1375 10 1 0.2298 -2.3622 0.2006 11 6 1.2593 -2.9251 -1.5819 12 6 2.4565 -3.1563 -2.2329 13 6 2.4585 -3.5498 -3.5579 14 6 3.7644 -3.8022 -4.2664 15 8 4.1356 -5.1730 -4.1072 16 6 1.2632 -3.7131 -4.2336 17 6 0.0652 -3.4835 -3.5846 18 6 0.0620 -3.0877 -2.2575 19 9 -1.1090 -2.8674 -1.6206 20 6 1.9395 -3.5679 0.7144 21 6 1.0457 -4.4505 1.5878 22 6 1.9271 -3.3778 2.2325 23 1 -0.4851 0.8400 -0.0004 24 1 3.3907 -3.0296 -1.7060 25 1 3.6518 -3.5771 -5.3270 26 1 4.5384 -3.1643 -3.8398 27 1 4.9688 -5.4074 -4.5383 28 1 1.2661 -4.0209 -5.2687 29 1 -0.8683 -3.6114 -4.1124 30 1 2.8231 -4.0280 0.2720 31 1 -0.0282 -4.2670 1.5559 32 1 1.3414 -5.4912 1.7205 33 1 2.8022 -3.7132 2.7889 34 1 1.4334 -2.4884 2.6243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260351117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:51 Heat of formation + Delta-G solvation = -57.289333 kcal Electronic energy + Delta-G solvation = -18327.499304 eV Core-core repulsion = 15333.126076 eV Total energy + Delta-G solvation = -2994.373228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.83921 -38.79730 -36.85365 -36.02642 -33.01551 -31.13469 -30.64002 -27.17423 -25.26430 -23.78182 -22.06862 -21.44409 -20.29761 -18.97285 -17.28792 -16.73999 -16.50140 -15.64877 -15.13004 -14.72106 -14.49948 -14.28647 -13.89386 -13.36171 -13.14463 -12.66792 -12.46866 -12.22975 -11.76754 -11.47647 -11.35309 -10.97464 -10.70259 -10.68178 -10.57096 -10.28993 -9.97441 -9.90494 -9.43419 -9.18440 -8.75133 -8.49661 -8.09984 -7.63179 -6.06792 -4.10870 1.85298 2.07454 3.27514 3.34689 3.36768 4.19483 4.38297 4.77123 4.82032 5.13569 5.23491 5.26553 5.31864 5.52832 5.63401 5.70907 5.77775 5.91475 5.95908 6.12735 6.33873 6.36544 6.50664 6.65654 6.75123 6.84300 6.92455 7.02492 7.05823 7.23144 7.33787 7.71451 7.76411 7.78131 7.89570 8.29266 8.96270 9.51408 11.00319 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.008725 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.047295 B = 3208.494446 C = 3483.830717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.087 3.913 10 H 0.079 0.921 11 C -0.055 4.055 12 C -0.066 4.066 13 C -0.119 4.119 14 C 0.124 3.876 15 O -0.568 6.568 16 C -0.104 4.104 17 C -0.167 4.167 18 C 0.101 3.899 19 F -0.134 7.134 20 C -0.119 4.119 21 C -0.201 4.201 22 C -0.168 4.168 23 H 0.263 0.737 24 H 0.124 0.876 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.373 0.627 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -6.833 -6.169 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.069 3.931 10 H 0.097 0.903 11 C -0.057 4.057 12 C -0.085 4.085 13 C -0.120 4.120 14 C 0.047 3.953 15 O -0.373 6.373 16 C -0.122 4.122 17 C -0.186 4.186 18 C 0.081 3.919 19 F -0.113 7.113 20 C -0.137 4.137 21 C -0.238 4.238 22 C -0.205 4.205 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.219 0.781 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.078 -6.695 -5.788 9.744 hybrid contribution 0.714 1.136 -0.372 1.392 sum 4.791 -5.559 -6.160 9.582 Atomic orbital electron populations 1.69939 1.05874 1.26849 1.48943 1.25016 0.94852 0.99275 0.94517 0.86628 0.79996 0.83476 0.78176 1.20621 1.21218 1.19724 1.20857 0.93358 0.89332 1.50410 0.92326 1.17685 0.99683 0.91271 0.84492 0.90338 1.20838 0.90374 0.93725 1.00717 1.20694 0.98076 0.97176 0.92518 1.19490 0.93594 1.03828 0.95039 1.20929 0.93970 0.82602 0.97829 1.86614 1.44274 1.27200 1.79226 1.20494 0.91220 1.01264 0.99226 1.20943 0.98856 1.05076 0.93741 1.17687 0.81883 1.01487 0.90820 1.91470 1.45570 1.92217 1.82026 1.22446 0.99536 0.99323 0.92427 1.22999 0.97876 0.95108 1.07818 1.22708 1.01010 1.00180 0.96626 0.92723 0.85805 0.93352 0.92896 0.78140 0.86513 0.85981 0.89819 0.89494 0.90506 0.90553 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 12.76 55.43 0.71 -24.45 16 2 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.50 -13.22 7.71 -34.44 -0.27 -13.49 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.09 2.14 2.22 -92.93 -0.21 1.93 16 10 H 0.08 2.17 6.00 -51.93 -0.31 1.86 16 11 C -0.06 -1.27 4.78 -104.56 -0.50 -1.76 16 12 C -0.07 -1.36 8.32 -39.59 -0.33 -1.69 16 13 C -0.12 -2.13 5.51 -104.62 -0.58 -2.71 16 14 C 0.12 1.72 7.17 36.01 0.26 1.98 16 15 O -0.57 -7.73 13.64 -35.23 -0.48 -8.21 16 16 C -0.10 -1.79 9.70 -39.60 -0.38 -2.17 16 17 C -0.17 -3.16 10.03 -39.51 -0.40 -3.56 16 18 C 0.10 2.26 7.25 -39.42 -0.29 1.98 16 19 F -0.13 -3.23 16.20 2.25 0.04 -3.20 16 20 C -0.12 -2.54 4.93 -90.62 -0.45 -2.98 16 21 C -0.20 -3.85 10.18 -26.69 -0.27 -4.13 16 22 C -0.17 -3.32 10.02 -26.69 -0.27 -3.59 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.12 2.45 7.80 -52.49 -0.41 2.04 16 25 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.37 2.96 9.12 45.56 0.42 3.38 16 28 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.08 1.70 7.42 -51.92 -0.39 1.32 16 31 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -30.19 297.98 -7.65 -37.84 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.61 Total: 6.02 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -3.77 Total: -28.48 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.71 Total: -24.45 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.48 Total: -8.21 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.19 -7.65 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.450 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds