Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47340 * 270.00278 * 3 2 1 5 5 H 1.48509 * 109.46953 * 29.99644 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99988 * 3 2 1 7 7 C 1.37875 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 186.09184 * 7 2 1 9 9 C 1.50704 * 120.00130 * 6.09741 * 7 2 1 10 10 H 1.08999 * 109.46603 * 335.65062 * 9 7 2 11 11 C 1.50692 * 109.47278 * 95.65101 * 9 7 2 12 12 C 1.38224 * 120.01147 * 59.97880 * 11 9 7 13 13 C 1.38223 * 120.02189 * 180.02562 * 12 11 9 14 14 C 1.50700 * 119.97100 * 180.02562 * 13 12 11 15 15 O 1.42901 * 109.47444 * 90.00661 * 14 13 12 16 16 C 1.38268 * 120.05414 * 359.97438 * 13 12 11 17 17 C 1.38170 * 120.02759 * 359.97438 * 16 13 12 18 18 C 1.38435 * 120.01442 * 240.00145 * 11 9 7 19 19 F 1.35108 * 120.02659 * 359.69870 * 18 11 9 20 20 C 1.52998 * 109.47026 * 215.65730 * 9 7 2 21 21 C 1.52995 * 117.50212 * 134.06631 * 20 9 7 22 22 C 1.53002 * 117.50376 * 65.39910 * 20 9 7 23 23 H 0.96999 * 120.00455 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.98810 * 0.02562 * 12 11 9 25 25 H 1.09007 * 109.47176 * 210.00466 * 14 13 12 26 26 H 1.08997 * 109.47503 * 330.00072 * 14 13 12 27 27 H 0.96695 * 114.00115 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.98350 * 180.02562 * 16 13 12 29 29 H 1.07999 * 120.01856 * 180.02562 * 17 16 13 30 30 H 1.09008 * 115.54582 * 279.73541 * 20 9 7 31 31 H 1.08994 * 117.49881 * 359.97438 * 21 20 9 32 32 H 1.08999 * 117.49833 * 145.02240 * 21 20 9 33 33 H 1.08991 * 117.50208 * 214.98016 * 22 20 9 34 34 H 1.08999 * 117.49441 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0799 -1.1966 0.0998 9 6 1.2574 -2.4956 -0.1375 10 1 0.2298 -2.3622 0.2006 11 6 1.2593 -2.9251 -1.5819 12 6 2.4565 -3.1563 -2.2329 13 6 2.4585 -3.5498 -3.5579 14 6 3.7644 -3.8022 -4.2664 15 8 4.1356 -5.1730 -4.1072 16 6 1.2632 -3.7131 -4.2336 17 6 0.0652 -3.4835 -3.5846 18 6 0.0620 -3.0877 -2.2575 19 9 -1.1090 -2.8674 -1.6206 20 6 1.9395 -3.5679 0.7144 21 6 1.0457 -4.4505 1.5878 22 6 1.9271 -3.3778 2.2325 23 1 -0.4851 0.8400 -0.0004 24 1 3.3907 -3.0296 -1.7060 25 1 3.6518 -3.5771 -5.3270 26 1 4.5384 -3.1643 -3.8398 27 1 4.9688 -5.4074 -4.5383 28 1 1.2661 -4.0209 -5.2687 29 1 -0.8683 -3.6114 -4.1124 30 1 2.8231 -4.0280 0.2720 31 1 -0.0282 -4.2670 1.5559 32 1 1.3414 -5.4912 1.7205 33 1 2.8022 -3.7132 2.7889 34 1 1.4334 -2.4884 2.6243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = -75.774808 kcal Electronic energy + Delta-G solvation = -18328.300894 eV Core-core repulsion = 15333.126076 eV Total energy + Delta-G solvation = -2995.174818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.59259 -40.29056 -38.35546 -37.23554 -34.92173 -32.84247 -32.04906 -28.97729 -26.52805 -25.67849 -23.62450 -23.03423 -21.79150 -20.70158 -18.49734 -18.33045 -18.24595 -17.25236 -16.66508 -16.56560 -16.26511 -15.72231 -15.11134 -14.90893 -14.83637 -14.27815 -14.00126 -13.72805 -13.37481 -13.25417 -13.04541 -12.80069 -12.42754 -12.28456 -12.06216 -11.87804 -11.74301 -11.18737 -11.01823 -10.88323 -10.54971 -10.43824 -9.63162 -9.24926 -8.11113 -6.21240 0.32850 0.55976 1.39536 1.40175 1.50124 2.40403 2.76239 3.13413 3.24871 3.61008 3.68312 3.94383 4.00969 4.17700 4.26844 4.31864 4.38900 4.43607 4.57551 4.64933 4.80114 4.86236 4.89122 5.11290 5.18532 5.25959 5.33646 5.42435 5.47192 5.63719 5.66309 5.76651 5.95600 6.18709 6.31747 6.91945 7.02070 7.43564 8.95362 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.008725 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.047295 B = 3208.494446 C = 3483.830717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.089 3.911 10 H 0.034 0.966 11 C -0.082 4.082 12 C -0.079 4.079 13 C -0.116 4.116 14 C 0.127 3.873 15 O -0.587 6.587 16 C -0.095 4.095 17 C -0.163 4.163 18 C 0.059 3.941 19 F -0.157 7.157 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.164 4.164 23 H 0.259 0.741 24 H 0.124 0.876 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.398 0.602 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -7.915 -8.032 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.070 3.930 10 H 0.052 0.948 11 C -0.083 4.083 12 C -0.097 4.097 13 C -0.116 4.116 14 C 0.050 3.950 15 O -0.396 6.396 16 C -0.113 4.113 17 C -0.182 4.182 18 C 0.040 3.960 19 F -0.135 7.135 20 C -0.155 4.155 21 C -0.223 4.223 22 C -0.201 4.201 23 H 0.068 0.932 24 H 0.142 0.858 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.249 0.751 28 H 0.178 0.822 29 H 0.165 0.835 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.283 -7.794 -7.659 12.605 hybrid contribution 0.079 1.354 0.139 1.364 sum 6.362 -6.440 -7.520 11.769 Atomic orbital electron populations 1.70105 1.07391 1.27131 1.51082 1.25773 0.95517 1.02550 0.94733 0.85675 0.79033 0.79569 0.78166 1.20303 1.21396 1.18572 1.21139 0.93336 0.90438 1.49178 0.92328 1.17468 0.97109 0.91885 0.86518 0.94779 1.20759 0.91810 0.95859 0.99915 1.20779 0.96955 0.98018 0.93992 1.20017 0.96143 1.01413 0.94030 1.20919 0.91905 0.83122 0.99061 1.86530 1.46291 1.26693 1.80064 1.21012 0.90075 0.99252 1.00926 1.21283 1.00993 1.03656 0.92227 1.18152 0.81218 1.04091 0.92563 1.91404 1.46628 1.92780 1.82729 1.22376 1.00500 0.99748 0.92859 1.23013 0.96759 0.96528 1.06002 1.22717 1.02031 0.99554 0.95780 0.93198 0.85786 0.90170 0.92014 0.75133 0.82228 0.83514 0.88567 0.91161 0.87253 0.87426 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 12.76 21.45 0.27 -54.79 16 2 C 0.01 0.75 5.45 84.65 0.46 1.21 16 3 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.50 -27.24 7.71 25.60 0.20 -27.04 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 9 C 0.09 4.54 2.22 -12.29 -0.03 4.51 16 10 H 0.03 2.02 6.00 -2.39 -0.01 2.00 16 11 C -0.08 -3.86 4.78 -19.82 -0.09 -3.95 16 12 C -0.08 -3.18 8.32 22.26 0.19 -3.00 16 13 C -0.12 -3.82 5.51 -19.86 -0.11 -3.93 16 14 C 0.13 2.99 7.17 71.24 0.51 3.50 16 15 O -0.59 -13.54 13.64 -148.98 -2.03 -15.58 16 16 C -0.09 -2.95 9.70 22.26 0.22 -2.73 16 17 C -0.16 -5.94 10.03 22.31 0.22 -5.72 16 18 C 0.06 2.71 7.25 22.38 0.16 2.88 16 19 F -0.16 -7.99 16.20 44.97 0.73 -7.26 16 20 C -0.14 -5.89 4.93 -10.80 -0.05 -5.94 16 21 C -0.19 -7.12 10.18 30.62 0.31 -6.81 16 22 C -0.16 -6.47 10.02 30.62 0.31 -6.16 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.12 4.83 7.80 -2.91 -0.02 4.81 16 25 H 0.08 1.42 8.09 -2.38 -0.02 1.40 16 26 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 27 H 0.40 4.60 9.12 -74.06 -0.68 3.92 16 28 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.10 3.86 7.42 -2.38 -0.02 3.85 16 31 H 0.07 2.90 8.08 -2.39 -0.02 2.88 16 32 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -68.36 297.98 3.72 -64.63 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.43 Total: 20.26 kcal Atomic # 6 Polarization: -55.48 SS G_CDS: 2.29 Total: -53.19 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.27 Total: -54.79 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -2.03 Total: -15.58 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.73 Total: -7.26 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.36 3.72 -64.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.140 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds