Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86792 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47327 * 240.00149 * 3 2 1 5 5 H 1.48500 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47068 * 119.99961 * 3 2 1 7 7 C 1.39948 * 119.99202 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99507 * 175.38294 * 7 2 1 9 9 C 1.41392 * 120.00471 * 355.38377 * 7 2 1 10 10 C 1.40715 * 120.24313 * 214.82043 * 9 7 2 11 11 C 1.37612 * 119.74468 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.25042 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.75030 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46922 * 189.13864 * 13 12 11 15 15 F 1.39892 * 109.47219 * 309.14272 * 13 12 11 16 16 C 1.52998 * 109.46722 * 69.14461 * 13 12 11 17 17 H 1.09003 * 110.91516 * 57.89270 * 16 13 12 18 18 C 1.55315 * 110.84398 * 181.47149 * 16 13 12 19 19 C 1.54951 * 100.94107 * 152.32369 * 18 16 13 20 20 O 1.43646 * 105.13545 * 323.55827 * 19 18 16 21 21 C 1.43243 * 109.97304 * 24.42747 * 20 19 18 22 22 C 1.38640 * 120.49808 * 0.27551 * 12 11 10 23 23 C 1.37617 * 120.24596 * 359.45220 * 22 12 11 24 24 H 0.97006 * 119.99416 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.12487 * 359.94986 * 10 9 7 26 26 H 1.08007 * 119.87602 * 180.02562 * 11 10 9 27 27 H 1.08995 * 111.12478 * 34.40534 * 18 16 13 28 28 H 1.09004 * 111.12366 * 270.24056 * 18 16 13 29 29 H 1.08992 * 110.30870 * 204.64244 * 19 18 16 30 30 H 1.08999 * 110.39381 * 82.51074 * 19 18 16 31 31 H 1.08991 * 109.83132 * 117.80555 * 21 20 19 32 32 H 1.09007 * 109.82988 * 238.77570 * 21 20 19 33 33 H 1.07999 * 119.87254 * 179.69894 * 22 12 11 34 34 H 1.08000 * 120.12825 * 180.27554 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0078 -1.2121 0.0005 8 1 3.0853 -1.2137 -0.0748 9 6 1.3042 -2.4345 0.0996 10 6 1.8628 -3.5189 0.8012 11 6 1.1688 -4.7038 0.8917 12 6 -0.0762 -4.8313 0.2953 13 6 -0.8266 -6.1338 0.4019 14 1 -1.6972 -6.1063 -0.2534 15 9 0.0111 -7.1872 0.0205 16 6 -1.2829 -6.3426 1.8473 17 1 -1.9082 -5.5147 2.1814 18 6 -2.0291 -7.6960 2.0012 19 6 -1.7416 -8.0229 3.4883 20 8 -0.4021 -7.5598 3.7220 21 6 -0.0705 -6.5285 2.7848 22 6 -0.6339 -3.7712 -0.4028 23 6 0.0397 -2.5752 -0.5014 24 1 -0.4849 0.8402 0.0004 25 1 2.8326 -3.4217 1.2666 26 1 1.5953 -5.5373 1.4300 27 1 -1.6060 -8.4550 1.3433 28 1 -3.0982 -7.5774 1.8247 29 1 -1.8055 -9.0975 3.6586 30 1 -2.4424 -7.4955 4.1355 31 1 0.1329 -5.5983 3.3152 32 1 0.8039 -6.8234 2.2045 33 1 -1.6023 -3.8832 -0.8676 34 1 -0.3985 -1.7492 -1.0419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = -87.774366 kcal Electronic energy + Delta-G solvation = -18094.745634 eV Core-core repulsion = 15099.050476 eV Total energy + Delta-G solvation = -2995.695158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.18202 -39.14151 -37.57663 -34.10989 -32.74165 -30.53464 -29.69131 -28.64570 -26.53049 -24.15405 -22.29581 -20.99807 -20.73618 -19.70639 -17.41616 -16.79916 -16.14189 -15.58900 -15.34346 -14.92486 -14.68395 -14.04419 -13.92170 -13.22827 -13.09143 -12.84837 -12.36932 -12.14817 -11.91982 -11.78113 -11.46023 -11.31451 -11.15072 -11.04064 -10.75663 -10.53969 -10.35621 -10.17358 -9.62981 -9.51224 -9.27750 -9.21290 -7.58828 -7.32205 -6.70378 -4.49531 2.63157 2.95703 3.04500 3.06424 3.12280 3.91118 4.00608 4.50392 4.56290 4.83322 4.99855 5.22566 5.28126 5.33972 5.48962 5.57114 5.63913 5.78436 5.83024 5.93554 6.08499 6.17197 6.25067 6.26232 6.48681 6.84613 7.02867 7.11691 7.16988 7.29881 7.53098 7.67883 7.93673 8.00456 8.21913 8.56814 8.83743 8.87247 10.20380 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.040969 B = 0.005078 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.284460 B = 5512.250292 C = 5630.284277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.215 4.215 11 C -0.081 4.081 12 C -0.247 4.247 13 C 0.166 3.834 14 H 0.077 0.923 15 F -0.217 7.217 16 C -0.140 4.140 17 H 0.099 0.901 18 C -0.157 4.157 19 C 0.053 3.947 20 O -0.389 6.389 21 C 0.057 3.943 22 C -0.091 4.091 23 C -0.154 4.154 24 H 0.279 0.721 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -8.001 2.472 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.234 4.234 11 C -0.099 4.099 12 C -0.248 4.248 13 C 0.130 3.870 14 H 0.095 0.905 15 F -0.197 7.197 16 C -0.159 4.159 17 H 0.117 0.883 18 C -0.194 4.194 19 C -0.024 4.024 20 O -0.309 6.309 21 C -0.019 4.019 22 C -0.110 4.110 23 C -0.174 4.174 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.604 -7.920 2.619 9.528 hybrid contribution 0.145 0.919 -0.108 0.936 sum -4.459 -7.002 2.511 8.672 Atomic orbital electron populations 1.69740 1.07350 1.28977 1.37558 1.25893 0.94953 1.01252 0.92364 0.86228 0.79820 0.79952 0.79861 1.18974 1.20351 1.19020 1.19562 0.94796 0.90211 1.44801 0.90536 1.17729 0.92080 0.91770 0.87543 1.21128 1.01129 0.95133 1.06056 1.20492 0.94165 0.96604 0.98650 1.19298 0.98644 0.94890 1.12016 1.19916 0.90837 0.82930 0.93350 0.90482 1.92755 1.74670 1.59857 1.92467 1.23341 0.97647 0.98417 0.96529 0.88255 1.23362 1.01189 0.97521 0.97346 1.23292 0.84629 0.99450 0.94986 1.88376 1.30490 1.55451 1.56574 1.23376 0.97520 0.90923 0.90113 1.20560 0.97989 0.93748 0.98689 1.21583 0.97333 0.95998 1.02453 0.90971 0.88638 0.88641 0.89883 0.89984 0.90148 0.92459 0.90846 0.90115 0.89195 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.56 10.60 55.55 0.59 -19.97 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.09 9.04 -37.74 -0.34 -12.44 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.11 2.90 5.55 -106.83 -0.59 2.30 16 10 C -0.22 -5.17 9.80 -38.88 -0.38 -5.55 16 11 C -0.08 -1.77 8.34 -39.66 -0.33 -2.10 16 12 C -0.25 -5.16 5.04 -104.32 -0.53 -5.69 16 13 C 0.17 2.86 3.38 -27.88 -0.09 2.76 16 14 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 15 F -0.22 -3.99 15.29 2.25 0.03 -3.95 16 16 C -0.14 -2.13 2.91 -88.67 -0.26 -2.39 16 17 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 18 C -0.16 -1.93 6.57 -24.47 -0.16 -2.09 16 19 C 0.05 0.66 7.78 38.19 0.30 0.95 16 20 O -0.39 -6.27 11.36 -35.23 -0.40 -6.67 16 21 C 0.06 0.93 5.66 37.88 0.21 1.14 16 22 C -0.09 -2.03 9.64 -39.66 -0.38 -2.41 16 23 C -0.15 -3.88 8.67 -38.87 -0.34 -4.22 16 24 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 25 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 26 H 0.10 1.90 5.47 -52.48 -0.29 1.61 16 27 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.08 1.41 5.22 -51.93 -0.27 1.13 16 33 H 0.09 1.76 7.95 -52.49 -0.42 1.34 16 34 H 0.13 3.40 6.14 -52.49 -0.32 3.08 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -27.10 280.93 -7.73 -34.83 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.17 Total: 6.03 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -2.99 Total: -28.06 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.59 Total: -19.97 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.40 Total: -6.67 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.03 Total: -3.95 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.10 -7.73 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.949 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds