Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 120.00218 * 2 1 4 4 H 1.48497 * 109.46802 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46860 * 120.00026 * 3 2 1 6 6 H 1.48498 * 109.46934 * 240.00031 * 3 2 1 7 7 C 1.39946 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00262 * 154.27847 * 7 2 1 9 9 C 1.41396 * 119.99971 * 334.27512 * 7 2 1 10 10 C 1.40724 * 120.24366 * 334.58098 * 9 7 2 11 11 C 1.37614 * 119.74470 * 179.72166 * 10 9 7 12 12 C 1.38638 * 120.24927 * 0.53193 * 11 10 9 13 13 C 1.50692 * 119.75394 * 179.74269 * 12 11 10 14 14 H 1.08999 * 109.47771 * 175.01987 * 13 12 11 15 15 F 1.39908 * 109.47195 * 55.02190 * 13 12 11 16 16 C 1.53004 * 109.47136 * 295.02385 * 13 12 11 17 17 H 1.08997 * 110.75091 * 304.30055 * 16 13 12 18 18 C 1.55307 * 110.84621 * 67.76703 * 16 13 12 19 19 C 1.55207 * 100.82574 * 152.18068 * 18 16 13 20 20 O 1.43650 * 105.26233 * 323.81785 * 19 18 16 21 21 C 1.43239 * 109.96980 * 24.28286 * 20 19 18 22 22 C 1.38637 * 120.49804 * 359.76200 * 12 11 10 23 23 C 1.37619 * 120.25051 * 359.96076 * 22 12 11 24 24 H 0.97006 * 120.00491 * 174.30128 * 1 2 3 25 25 H 1.08000 * 120.12665 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.87778 * 180.28042 * 11 10 9 27 27 H 1.08996 * 111.12481 * 270.24176 * 18 16 13 28 28 H 1.09003 * 111.12742 * 34.41086 * 18 16 13 29 29 H 1.09001 * 110.37498 * 204.80073 * 19 18 16 30 30 H 1.08998 * 110.21056 * 82.75245 * 19 18 16 31 31 H 1.09006 * 109.83150 * 238.77849 * 21 20 19 32 32 H 1.08996 * 109.83241 * 117.80535 * 21 20 19 33 33 H 1.08007 * 119.87491 * 179.97438 * 22 12 11 34 34 H 1.08005 * 120.12496 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0959 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0076 -1.2582 -0.4065 9 6 1.4060 -2.3760 0.5304 10 6 0.3966 -2.2704 1.5053 11 6 -0.1862 -3.4099 2.0109 12 6 0.2252 -4.6588 1.5714 13 6 -0.4167 -5.8994 2.1369 14 1 -0.0339 -6.7766 1.6153 15 9 -1.8036 -5.8251 1.9684 16 6 -0.0891 -6.0090 3.6274 17 1 0.9888 -5.9919 3.7883 18 6 -0.7858 -4.8771 4.4310 19 6 -0.9461 -5.5591 5.8160 20 8 -1.2275 -6.9381 5.5282 21 6 -0.7154 -7.2824 4.2355 22 6 1.2229 -4.7749 0.6159 23 6 1.8158 -3.6488 0.0922 24 1 -0.4851 -0.8359 -0.0834 25 1 0.0778 -1.2987 1.8524 26 1 -0.9642 -3.3312 2.7559 27 1 -0.1510 -3.9935 4.4959 28 1 -1.7567 -4.6305 4.0013 29 1 -1.7736 -5.1111 6.3661 30 1 -0.0219 -5.4729 6.3874 31 1 -1.5263 -7.6359 3.5986 32 1 0.0445 -8.0577 4.3332 33 1 1.5359 -5.7529 0.2810 34 1 2.5932 -3.7417 -0.6518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = -109.687468 kcal Electronic energy + Delta-G solvation = -18151.878688 eV Core-core repulsion = 15155.233306 eV Total energy + Delta-G solvation = -2996.645382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.63636 -40.38358 -39.52547 -36.19314 -34.22190 -31.64046 -31.50066 -30.45124 -28.04208 -25.50718 -23.85744 -22.64486 -22.40535 -21.26334 -19.88329 -18.05413 -17.40881 -17.10052 -16.77552 -16.39696 -15.89231 -15.78525 -15.29988 -15.17618 -14.78087 -14.23976 -14.13682 -13.93760 -13.51326 -13.37024 -12.98845 -12.83538 -12.60662 -12.35695 -12.00572 -11.89245 -11.83912 -11.69263 -11.38276 -11.18659 -10.88119 -10.51808 -9.64536 -9.52385 -9.19937 -6.51997 0.78344 0.92042 1.49455 1.60651 1.78581 2.30991 2.59277 2.85976 3.26904 3.46812 3.65763 3.77748 4.00961 4.05800 4.17466 4.21193 4.26685 4.37883 4.45269 4.68244 4.75825 4.79944 4.85266 4.89960 4.94855 5.08214 5.17053 5.20856 5.39582 5.67682 5.74271 5.77987 5.95883 5.99085 6.20641 6.34483 6.74032 6.89013 7.98760 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.036568 B = 0.005366 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.502580 B = 5216.820772 C = 5531.920658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.004 3.996 3 Si 1.117 2.883 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.073 3.927 10 C -0.243 4.243 11 C -0.062 4.062 12 C -0.256 4.256 13 C 0.167 3.833 14 H 0.105 0.895 15 F -0.226 7.226 16 C -0.138 4.138 17 H 0.108 0.892 18 C -0.152 4.152 19 C 0.053 3.947 20 O -0.403 6.403 21 C 0.057 3.943 22 C -0.061 4.061 23 C -0.247 4.247 24 H 0.283 0.717 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -8.266 6.772 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.584 4.584 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.262 4.262 11 C -0.080 4.080 12 C -0.257 4.257 13 C 0.131 3.869 14 H 0.122 0.878 15 F -0.206 7.206 16 C -0.156 4.156 17 H 0.126 0.874 18 C -0.190 4.190 19 C -0.023 4.023 20 O -0.323 6.323 21 C -0.019 4.019 22 C -0.079 4.079 23 C -0.266 4.266 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.583 -6.786 6.952 9.732 hybrid contribution 0.079 -1.282 -0.510 1.383 sum 0.662 -8.068 6.441 10.345 Atomic orbital electron populations 1.70576 1.09048 1.33210 1.30987 1.28465 0.95612 1.07563 0.89589 0.83018 0.74785 0.69691 0.79189 1.19644 1.18754 1.18075 1.20836 1.03604 0.95442 1.38493 0.90812 1.18071 0.91174 0.93724 0.90024 1.21100 1.05084 0.97139 1.02911 1.20781 0.97367 0.92199 0.97682 1.19603 1.05428 0.93845 1.06838 1.20033 0.74633 0.96864 0.95381 0.87765 1.92758 1.33513 1.97729 1.96644 1.23304 1.02511 0.95749 0.94083 0.87402 1.23398 1.01277 0.98700 0.95579 1.23525 1.02013 0.80609 0.96123 1.88331 1.80718 1.28034 1.35253 1.23241 0.98545 0.96241 0.83912 1.20791 0.94779 0.97800 0.94557 1.21130 1.06916 0.92689 1.05878 0.90491 0.89598 0.87047 0.89841 0.91108 0.88649 0.90811 0.91169 0.89117 0.85212 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.32 12.32 21.83 0.27 -44.05 16 2 C 0.00 0.21 4.93 85.26 0.42 0.63 16 3 Si 1.12 42.67 30.00 68.60 2.06 44.73 16 4 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 7 C -0.56 -29.77 8.98 23.46 0.21 -29.56 16 8 H 0.07 3.83 7.96 -2.91 -0.02 3.81 16 9 C 0.07 3.84 5.30 -21.29 -0.11 3.73 16 10 C -0.24 -12.40 7.96 22.73 0.18 -12.22 16 11 C -0.06 -2.73 8.20 22.22 0.18 -2.55 16 12 C -0.26 -10.04 5.07 -19.68 -0.10 -10.14 16 13 C 0.17 5.17 3.31 29.85 0.10 5.27 16 14 H 0.10 2.68 7.87 -2.39 -0.02 2.66 16 15 F -0.23 -7.93 15.40 44.97 0.69 -7.23 16 16 C -0.14 -3.66 2.87 -9.53 -0.03 -3.69 16 17 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 18 C -0.15 -4.20 4.57 32.14 0.15 -4.06 16 19 C 0.05 1.26 7.78 72.74 0.57 1.83 16 20 O -0.40 -10.94 11.36 -148.98 -1.69 -12.63 16 21 C 0.06 1.36 7.34 72.45 0.53 1.90 16 22 C -0.06 -2.46 9.64 22.22 0.21 -2.24 16 23 C -0.25 -11.63 9.80 22.73 0.22 -11.41 16 24 H 0.28 16.09 6.70 -92.70 -0.62 15.46 16 25 H 0.09 4.65 6.50 -2.91 -0.02 4.63 16 26 H 0.11 4.49 5.49 -2.91 -0.02 4.48 16 27 H 0.08 2.42 7.19 -2.39 -0.02 2.40 16 28 H 0.07 2.16 6.57 -2.39 -0.02 2.14 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.72 7.40 -2.38 -0.02 1.70 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.13 4.18 7.94 -2.91 -0.02 4.15 16 34 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -59.55 280.41 5.11 -54.44 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 1.25 Total: 27.26 kcal Atomic # 6 Polarization: -65.05 SS G_CDS: 2.53 Total: -62.51 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.27 Total: -44.05 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.69 Total: -12.63 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.69 Total: -7.23 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.06 Total: 44.73 kcal Total: -59.55 5.11 -54.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.247 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds