Wall clock time and date at job start Mon Mar 30 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46905 * 2 1 4 4 C 1.50696 * 109.47014 * 239.99828 * 2 1 3 5 5 H 1.08000 * 120.00266 * 239.99575 * 4 2 1 6 6 C 1.37881 * 119.99894 * 60.00357 * 4 2 1 7 7 N 1.31514 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47260 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47081 * 119.99692 * 8 6 4 11 11 H 1.48498 * 109.47435 * 239.99890 * 8 6 4 12 12 C 1.53001 * 109.46719 * 120.00076 * 2 1 3 13 13 H 1.08997 * 115.55450 * 34.33118 * 12 2 1 14 14 C 1.52997 * 117.51528 * 248.62392 * 12 2 1 15 15 C 1.53000 * 60.00347 * 252.52230 * 14 12 2 16 16 H 1.08990 * 117.49990 * 252.50929 * 15 14 12 17 17 C 1.50697 * 117.49504 * 107.48912 * 15 14 12 18 18 C 1.38265 * 119.99756 * 351.10297 * 17 15 14 19 19 C 1.38213 * 120.02982 * 179.76765 * 18 17 15 20 20 C 1.38240 * 120.01256 * 0.51143 * 19 18 17 21 21 C 1.38334 * 119.98465 * 359.74295 * 20 19 18 22 22 Cl 1.73599 * 120.01166 * 179.97438 * 21 20 19 23 23 C 1.38191 * 119.99147 * 171.38056 * 17 15 14 24 24 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47158 * 299.99878 * 1 2 3 26 26 H 1.08997 * 109.47493 * 60.00228 * 1 2 3 27 27 H 0.96999 * 119.99992 * 180.02562 * 7 6 4 28 28 H 1.09002 * 117.49910 * 145.03371 * 14 12 2 29 29 H 1.09002 * 117.49884 * 0.02562 * 14 12 2 30 30 H 1.07997 * 119.98480 * 0.02562 * 18 17 15 31 31 H 1.08005 * 119.99687 * 180.27777 * 19 18 17 32 32 H 1.07995 * 120.00956 * 179.77180 * 20 19 18 33 33 H 1.08000 * 120.00557 * 359.95583 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0399 -0.7213 1.2493 13 1 1.4310 -1.5585 1.5902 14 6 2.7418 0.1222 2.3155 15 6 3.5550 -0.8282 1.4343 16 1 3.9427 -1.7356 1.8970 17 6 4.4307 -0.2144 0.3725 18 6 4.3409 1.1380 0.0991 19 6 5.1471 1.7024 -0.8713 20 6 6.0363 0.9132 -1.5766 21 6 6.1228 -0.4409 -1.3072 22 17 7.2387 -1.4329 -2.1929 23 6 5.3192 -1.0045 -0.3318 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7082 1.1609 -3.4844 28 1 2.5946 -0.1601 3.3579 29 1 2.8400 1.1913 2.1272 30 1 3.6435 1.7542 0.6469 31 1 5.0797 2.7597 -1.0814 32 1 6.6636 1.3536 -2.3374 33 1 5.3865 -2.0615 -0.1208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260383068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:18 Heat of formation + Delta-G solvation = 31.604975 kcal Electronic energy + Delta-G solvation = -16426.193364 eV Core-core repulsion = 13864.011258 eV Total energy + Delta-G solvation = -2562.182106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.30621 -36.96052 -35.77905 -33.23426 -30.60650 -30.01993 -29.37352 -25.04527 -23.36887 -22.28935 -22.05581 -20.01586 -18.87767 -16.52050 -15.92839 -15.22515 -14.88509 -14.51810 -14.05983 -13.51862 -13.05942 -12.92102 -12.65037 -11.99819 -11.60230 -11.47664 -11.10177 -11.00178 -10.86196 -10.76118 -10.61153 -10.36933 -10.28025 -10.10335 -9.72362 -9.50454 -9.19184 -8.63964 -8.26226 -8.14279 -7.74316 -5.91442 -3.93495 1.83502 1.93042 2.59501 3.34839 3.43669 3.49553 4.15900 4.50862 4.75672 5.21059 5.38075 5.41272 5.58926 5.61512 5.63938 5.79554 5.88512 6.05289 6.20294 6.37915 6.40594 6.57422 6.64316 6.79337 6.82094 6.93212 6.97606 7.20382 7.27180 7.37713 7.46000 7.79110 8.00268 8.18323 8.51970 9.07582 9.70031 11.14644 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.011454 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.299999 B = 2443.981382 C = 3423.145248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.067 3.933 3 H 0.032 0.968 4 C -0.488 4.488 5 H 0.055 0.945 6 C 0.066 3.934 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.284 1.284 12 C -0.102 4.102 13 H 0.090 0.910 14 C -0.190 4.190 15 C -0.124 4.124 16 H 0.099 0.901 17 C 0.012 3.988 18 C -0.088 4.088 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.031 4.031 22 Cl -0.096 7.096 23 C -0.106 4.106 24 H 0.024 0.976 25 H 0.006 0.994 26 H 0.083 0.917 27 H 0.256 0.744 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -0.130 5.701 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.526 4.526 5 H 0.073 0.927 6 C -0.134 4.134 7 N -0.532 5.532 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.211 1.211 12 C -0.120 4.120 13 H 0.108 0.892 14 C -0.227 4.227 15 C -0.142 4.142 16 H 0.117 0.883 17 C 0.011 3.989 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.147 4.147 21 C -0.057 4.057 22 Cl -0.067 7.067 23 C -0.125 4.125 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.757 -0.116 5.478 9.497 hybrid contribution 0.328 -0.668 -1.193 1.407 sum 8.085 -0.784 4.285 9.184 Atomic orbital electron populations 1.21783 0.98647 0.98890 1.00009 1.18412 0.92244 0.95302 0.89172 0.95022 1.21075 1.29755 1.11889 0.89901 0.92689 1.24818 0.95147 0.94928 0.98529 1.69878 1.37297 1.23159 1.22842 0.86785 0.78670 0.80278 0.84039 1.19560 1.21353 1.21063 1.22821 0.91003 1.00144 0.98030 0.89211 1.23181 1.06175 0.97596 0.95721 1.20963 0.94289 1.00007 0.98943 0.88338 1.18732 0.92817 0.92697 0.94633 1.20965 0.97310 0.94821 0.97546 1.20888 0.95636 0.99463 0.95952 1.20780 1.00987 0.91849 1.01077 1.20686 0.96176 0.91596 0.97269 1.98315 1.61977 1.70721 1.75679 1.20588 0.96378 0.99600 0.95936 0.95711 0.97515 0.89874 0.93378 0.89808 0.88955 0.85880 0.86027 0.86167 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.95 37.16 0.33 -2.85 16 2 C 0.07 1.56 1.72 -91.77 -0.16 1.41 16 3 H 0.03 0.79 5.89 -51.93 -0.31 0.49 16 4 C -0.49 -12.69 6.74 -34.44 -0.23 -12.92 16 5 H 0.05 1.47 7.16 -52.49 -0.38 1.09 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.87 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 12 C -0.10 -1.98 5.10 -90.62 -0.46 -2.45 16 13 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 14 C -0.19 -3.10 9.51 -26.73 -0.25 -3.35 16 15 C -0.12 -2.19 5.87 -91.77 -0.54 -2.73 16 16 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.01 0.22 3.57 -104.63 -0.37 -0.16 16 18 C -0.09 -1.65 7.56 -39.58 -0.30 -1.95 16 19 C -0.10 -1.79 10.05 -39.59 -0.40 -2.19 16 20 C -0.13 -2.25 9.83 -39.55 -0.39 -2.64 16 21 C -0.03 -0.57 6.32 -39.50 -0.25 -0.81 16 22 Cl -0.10 -1.58 28.96 -51.86 -1.50 -3.08 16 23 C -0.11 -1.98 9.33 -39.55 -0.37 -2.35 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.50 6.09 -51.93 -0.32 1.18 16 30 H 0.12 2.23 5.15 -52.49 -0.27 1.96 16 31 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -27.60 284.53 -9.19 -36.79 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.10 Total: 0.87 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: -3.49 Total: -31.28 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.60 -9.19 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260383068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.393 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds