Wall clock time and date at job start Mon Mar 30 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46905 * 2 1 4 4 C 1.50696 * 109.47014 * 239.99828 * 2 1 3 5 5 H 1.08000 * 120.00266 * 239.99575 * 4 2 1 6 6 C 1.37881 * 119.99894 * 60.00357 * 4 2 1 7 7 N 1.31514 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47260 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47081 * 119.99692 * 8 6 4 11 11 H 1.48498 * 109.47435 * 239.99890 * 8 6 4 12 12 C 1.53001 * 109.46719 * 120.00076 * 2 1 3 13 13 H 1.08997 * 115.55450 * 34.33118 * 12 2 1 14 14 C 1.52997 * 117.51528 * 248.62392 * 12 2 1 15 15 C 1.53000 * 60.00347 * 252.52230 * 14 12 2 16 16 H 1.08990 * 117.49990 * 252.50929 * 15 14 12 17 17 C 1.50697 * 117.49504 * 107.48912 * 15 14 12 18 18 C 1.38265 * 119.99756 * 351.10297 * 17 15 14 19 19 C 1.38213 * 120.02982 * 179.76765 * 18 17 15 20 20 C 1.38240 * 120.01256 * 0.51143 * 19 18 17 21 21 C 1.38334 * 119.98465 * 359.74295 * 20 19 18 22 22 Cl 1.73599 * 120.01166 * 179.97438 * 21 20 19 23 23 C 1.38191 * 119.99147 * 171.38056 * 17 15 14 24 24 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47158 * 299.99878 * 1 2 3 26 26 H 1.08997 * 109.47493 * 60.00228 * 1 2 3 27 27 H 0.96999 * 119.99992 * 180.02562 * 7 6 4 28 28 H 1.09002 * 117.49910 * 145.03371 * 14 12 2 29 29 H 1.09002 * 117.49884 * 0.02562 * 14 12 2 30 30 H 1.07997 * 119.98480 * 0.02562 * 18 17 15 31 31 H 1.08005 * 119.99687 * 180.27777 * 19 18 17 32 32 H 1.07995 * 120.00956 * 179.77180 * 20 19 18 33 33 H 1.08000 * 120.00557 * 359.95583 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0399 -0.7213 1.2493 13 1 1.4310 -1.5585 1.5902 14 6 2.7418 0.1222 2.3155 15 6 3.5550 -0.8282 1.4343 16 1 3.9427 -1.7356 1.8970 17 6 4.4307 -0.2144 0.3725 18 6 4.3409 1.1380 0.0991 19 6 5.1471 1.7024 -0.8713 20 6 6.0363 0.9132 -1.5766 21 6 6.1228 -0.4409 -1.3072 22 17 7.2387 -1.4329 -2.1929 23 6 5.3192 -1.0045 -0.3318 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7082 1.1609 -3.4844 28 1 2.5946 -0.1601 3.3579 29 1 2.8400 1.1913 2.1272 30 1 3.6435 1.7542 0.6469 31 1 5.0797 2.7597 -1.0814 32 1 6.6636 1.3536 -2.3374 33 1 5.3865 -2.0615 -0.1208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260383068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:18 Heat of formation + Delta-G solvation = 20.084962 kcal Electronic energy + Delta-G solvation = -16426.692909 eV Core-core repulsion = 13864.011258 eV Total energy + Delta-G solvation = -2562.681652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71759 -38.40057 -37.15605 -35.14058 -32.21819 -31.56510 -30.90303 -27.06022 -24.77248 -23.89248 -23.53212 -21.43381 -20.46183 -18.26663 -17.62148 -16.67746 -16.46193 -16.22241 -15.51597 -15.06258 -14.59420 -14.43073 -14.30484 -13.68008 -13.30374 -12.90694 -12.89357 -12.76835 -12.42108 -12.35048 -12.20777 -12.14153 -11.90740 -11.63795 -11.38731 -11.11354 -10.87747 -10.40164 -10.29121 -9.55864 -9.17389 -7.98415 -6.02718 0.42509 0.53255 1.22308 1.34239 1.40576 1.48131 2.46966 2.76740 3.32378 3.35922 3.83993 4.04444 4.22089 4.24383 4.28583 4.37886 4.51530 4.69040 4.86611 4.95227 5.02931 5.08139 5.09653 5.18933 5.31036 5.42095 5.50123 5.51131 5.59154 5.75650 5.84577 6.07860 6.10896 6.23172 6.52831 7.04529 7.61877 9.06512 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.011454 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.299999 B = 2443.981382 C = 3423.145248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.068 3.932 3 H 0.014 0.986 4 C -0.477 4.477 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.915 5.915 8 Si 0.911 3.089 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.288 1.288 12 C -0.126 4.126 13 H 0.097 0.903 14 C -0.163 4.163 15 C -0.124 4.124 16 H 0.119 0.881 17 C -0.003 4.003 18 C -0.103 4.103 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.043 4.043 22 Cl -0.084 7.084 23 C -0.120 4.120 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.253 0.747 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 -0.458 6.686 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.050 3.950 3 H 0.032 0.968 4 C -0.516 4.516 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.557 5.557 8 Si 0.739 3.261 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.214 1.214 12 C -0.144 4.144 13 H 0.115 0.885 14 C -0.200 4.200 15 C -0.142 4.142 16 H 0.137 0.863 17 C -0.003 4.003 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.154 4.154 21 C -0.070 4.070 22 Cl -0.055 7.055 23 C -0.138 4.138 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.472 -0.454 6.466 10.667 hybrid contribution 0.145 -0.567 -1.495 1.606 sum 8.617 -1.022 4.971 10.000 Atomic orbital electron populations 1.21666 0.98897 0.98635 0.99579 1.18285 0.92011 0.94478 0.90228 0.96779 1.21268 1.28405 1.11047 0.90883 0.93633 1.25293 0.95838 0.95608 1.00368 1.69973 1.38615 1.24270 1.22837 0.86201 0.78149 0.79443 0.82274 1.19585 1.21324 1.21398 1.22589 0.92443 1.01439 0.97948 0.88507 1.23244 1.03042 0.97188 0.96495 1.21088 0.92772 1.01273 0.99031 0.86343 1.18955 0.93233 0.92894 0.95204 1.21136 0.97731 0.95119 0.98134 1.21206 0.95311 1.00652 0.95587 1.21074 1.01105 0.91805 1.01366 1.20889 0.96474 0.92171 0.97446 1.98313 1.61449 1.70394 1.75331 1.20793 0.96657 1.00141 0.96237 0.95773 0.95334 0.92852 0.93716 0.86635 0.89066 0.85817 0.84088 0.84281 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.95 71.98 0.64 -5.37 16 2 C 0.07 3.14 1.72 -11.54 -0.02 3.12 16 3 H 0.01 0.70 5.89 -2.39 -0.01 0.69 16 4 C -0.48 -24.61 6.74 25.60 0.17 -24.44 16 5 H 0.05 2.40 7.16 -2.91 -0.02 2.38 16 6 C 0.03 1.43 5.30 84.66 0.45 1.88 16 7 N -0.92 -51.72 11.32 21.45 0.24 -51.47 16 8 Si 0.91 44.56 29.54 68.60 2.03 46.59 16 9 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 C -0.13 -4.66 5.10 -10.79 -0.06 -4.71 16 13 H 0.10 3.42 8.11 -2.39 -0.02 3.40 16 14 C -0.16 -4.83 9.51 30.59 0.29 -4.54 16 15 C -0.12 -4.08 5.87 -11.54 -0.07 -4.15 16 16 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 17 C 0.00 -0.09 3.57 -19.87 -0.07 -0.16 16 18 C -0.10 -3.76 7.56 22.27 0.17 -3.59 16 19 C -0.11 -3.75 10.05 22.26 0.22 -3.52 16 20 C -0.13 -4.56 9.83 22.29 0.22 -4.34 16 21 C -0.04 -1.53 6.32 22.33 0.14 -1.39 16 22 Cl -0.08 -2.64 28.96 -2.72 -0.08 -2.71 16 23 C -0.12 -4.30 9.33 22.29 0.21 -4.09 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 2.79 6.07 -2.39 -0.01 2.77 16 27 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.09 2.74 6.09 -2.39 -0.01 2.73 16 30 H 0.12 4.39 5.15 -2.91 -0.02 4.37 16 31 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -57.38 284.53 5.60 -51.78 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.10 Total: 11.13 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 2.30 Total: -55.31 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.24 Total: -51.47 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.08 Total: -2.71 kcal Total: -57.38 5.60 -51.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260383068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.867 kcal (2) G-P(sol) polarization free energy of solvation -57.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds