Wall clock time and date at job start Mon Mar 30 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38219 * 119.97322 * 99.72706 * 11 10 9 13 13 C 1.38640 * 120.14029 * 179.70809 * 12 11 10 14 14 C 1.39009 * 119.90769 * 0.44477 * 13 12 11 15 15 C 1.38649 * 119.87340 * 359.90909 * 14 13 12 16 16 C 1.38647 * 120.02594 * 359.85956 * 15 14 13 17 17 O 1.35977 * 120.00234 * 179.97438 * 16 15 14 18 18 O 1.36115 * 120.77179 * 180.14711 * 14 13 12 19 19 C 1.43165 * 116.73376 * 342.73524 * 18 14 13 20 20 C 1.53469 * 108.25317 * 46.20017 * 19 18 14 21 21 O 1.36212 * 119.33687 * 180.12895 * 13 12 11 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08002 * 119.92806 * 359.97438 * 12 11 10 28 28 H 1.07997 * 119.98243 * 179.88327 * 15 14 13 29 29 H 0.96700 * 114.00212 * 270.02645 * 17 16 15 30 30 H 1.09007 * 109.71145 * 286.51267 * 19 18 14 31 31 H 1.08999 * 109.70389 * 165.89176 * 19 18 14 32 32 H 1.08999 * 109.71214 * 180.55374 * 20 19 18 33 33 H 1.08997 * 109.70910 * 59.92906 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.3211 -5.6667 -1.1787 13 6 0.6336 -6.8707 -1.1811 14 6 0.1069 -7.3704 0.0043 15 6 0.2726 -6.6638 1.1857 16 6 0.9649 -5.4625 1.1843 17 8 1.1267 -4.7696 2.3431 18 8 -0.5685 -8.5520 0.0228 19 6 -1.0351 -9.0468 -1.2370 20 6 0.1082 -8.9274 -2.2537 21 8 0.4775 -7.5477 -2.3527 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 1.7279 -5.2767 -2.1000 28 1 -0.1375 -7.0494 2.1073 29 1 0.4196 -4.1353 2.5240 30 1 -1.8875 -8.4552 -1.5714 31 1 -1.3292 -10.0914 -1.1355 32 1 -0.2253 -9.2894 -3.2263 33 1 0.9630 -9.5135 -1.9162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:01 Heat of formation + Delta-G solvation = -103.887863 kcal Electronic energy + Delta-G solvation = -17939.222083 eV Core-core repulsion = 14930.455402 eV Total energy + Delta-G solvation = -3008.766682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13467 -38.79663 -37.16044 -35.65567 -33.86936 -31.98880 -30.31301 -29.51791 -27.61015 -25.20473 -24.03357 -22.56891 -21.27706 -20.06561 -18.59072 -17.85791 -17.15226 -16.37525 -16.27912 -15.09954 -14.99201 -14.55182 -14.48209 -14.41689 -14.26190 -13.69799 -13.01309 -12.65462 -12.50873 -12.18362 -11.85722 -11.35034 -11.14581 -10.91183 -10.78109 -10.62477 -10.44570 -10.09308 -9.80057 -9.51873 -9.11124 -8.34737 -8.28871 -7.57935 -6.00212 -4.02775 1.46126 1.54639 3.02836 3.24231 3.34551 3.38764 3.41551 3.84472 4.18502 4.46587 4.67791 4.72626 4.78542 4.79463 5.12981 5.32836 5.35748 5.37784 5.54107 5.66303 5.93716 6.24630 6.33566 6.39907 6.63895 6.73147 6.91814 7.00714 7.07802 7.50424 7.65183 7.78833 7.98635 8.10344 8.40597 9.03414 9.61332 11.10831 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.038475 B = 0.004843 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.567830 B = 5780.432436 C = 6096.738331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.074 4.074 11 C -0.075 4.075 12 C -0.101 4.101 13 C 0.040 3.960 14 C 0.045 3.955 15 C -0.141 4.141 16 C 0.114 3.886 17 O -0.490 6.490 18 O -0.310 6.310 19 C 0.021 3.979 20 C 0.021 3.979 21 O -0.308 6.308 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 -17.361 -2.046 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.111 4.111 11 C -0.076 4.076 12 C -0.119 4.119 13 C -0.004 4.004 14 C 0.001 3.999 15 C -0.160 4.160 16 C 0.069 3.931 17 O -0.301 6.301 18 O -0.225 6.225 19 C -0.054 4.054 20 C -0.055 4.055 21 O -0.223 6.223 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.252 0.748 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.543 -17.614 -2.020 17.796 hybrid contribution -0.205 0.988 -0.168 1.023 sum -1.748 -16.626 -2.188 16.860 Atomic orbital electron populations 1.69956 1.06054 1.26737 1.50776 1.25008 0.94836 0.99218 0.95265 0.86647 0.79577 0.83068 0.78662 1.20243 1.21329 1.20188 1.21201 0.93085 0.90865 1.50718 0.92582 1.19021 0.93662 0.90549 0.97197 1.20743 0.98409 0.90148 1.01837 1.20497 0.98685 0.97512 0.90887 1.20261 0.99715 0.92994 0.98957 1.18839 1.01577 0.95370 0.84653 1.18480 0.98910 0.88741 0.93770 1.20538 1.02975 0.95651 0.96800 1.17835 0.97998 0.91431 0.85815 1.84741 1.51429 1.56518 1.37404 1.86261 1.70364 1.34896 1.31010 1.23577 0.96540 1.01564 0.83759 1.23560 0.98013 0.82077 1.01824 1.86333 1.85743 1.22858 1.27336 0.92945 0.96539 0.96699 0.91182 0.92120 0.84464 0.84682 0.74811 0.90619 0.86450 0.86419 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.83 4.95 -27.89 -0.14 0.69 16 10 C -0.07 -1.56 4.94 -27.88 -0.14 -1.70 16 11 C -0.07 -1.42 5.15 -104.47 -0.54 -1.96 16 12 C -0.10 -1.78 9.58 -39.44 -0.38 -2.16 16 13 C 0.04 0.66 6.49 -39.15 -0.25 0.41 16 14 C 0.05 0.73 6.49 -39.14 -0.25 0.48 16 15 C -0.14 -2.29 9.90 -39.28 -0.39 -2.68 16 16 C 0.11 2.05 6.67 -39.28 -0.26 1.78 16 17 O -0.49 -8.51 12.65 -19.67 -0.25 -8.76 16 18 O -0.31 -4.34 10.42 -32.88 -0.34 -4.69 16 19 C 0.02 0.21 7.26 37.40 0.27 0.48 16 20 C 0.02 0.21 7.26 37.40 0.27 0.48 16 21 O -0.31 -4.50 10.42 -33.19 -0.35 -4.85 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.39 7.62 -51.93 -0.40 -0.01 16 25 H 0.07 1.49 7.85 -51.93 -0.41 1.08 16 26 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 27 H 0.14 2.29 8.04 -52.49 -0.42 1.87 16 28 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.39 5.79 8.62 45.56 0.39 6.18 16 30 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -32.40 285.84 -6.46 -38.86 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.33 Total: 2.02 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.22 Total: -17.52 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.94 Total: -18.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.40 -6.46 -38.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.028 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds