Wall clock time and date at job start Mon Mar 30 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38219 * 119.97322 * 99.72706 * 11 10 9 13 13 C 1.38640 * 120.14029 * 179.70809 * 12 11 10 14 14 C 1.39009 * 119.90769 * 0.44477 * 13 12 11 15 15 C 1.38649 * 119.87340 * 359.90909 * 14 13 12 16 16 C 1.38647 * 120.02594 * 359.85956 * 15 14 13 17 17 O 1.35977 * 120.00234 * 179.97438 * 16 15 14 18 18 O 1.36115 * 120.77179 * 180.14711 * 14 13 12 19 19 C 1.43165 * 116.73376 * 342.73524 * 18 14 13 20 20 C 1.53469 * 108.25317 * 46.20017 * 19 18 14 21 21 O 1.36212 * 119.33687 * 180.12895 * 13 12 11 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08002 * 119.92806 * 359.97438 * 12 11 10 28 28 H 1.07997 * 119.98243 * 179.88327 * 15 14 13 29 29 H 0.96700 * 114.00212 * 270.02645 * 17 16 15 30 30 H 1.09007 * 109.71145 * 286.51267 * 19 18 14 31 31 H 1.08999 * 109.70389 * 165.89176 * 19 18 14 32 32 H 1.08999 * 109.71214 * 180.55374 * 20 19 18 33 33 H 1.08997 * 109.70910 * 59.92906 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.3211 -5.6667 -1.1787 13 6 0.6336 -6.8707 -1.1811 14 6 0.1069 -7.3704 0.0043 15 6 0.2726 -6.6638 1.1857 16 6 0.9649 -5.4625 1.1843 17 8 1.1267 -4.7696 2.3431 18 8 -0.5685 -8.5520 0.0228 19 6 -1.0351 -9.0468 -1.2370 20 6 0.1082 -8.9274 -2.2537 21 8 0.4775 -7.5477 -2.3527 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 1.7279 -5.2767 -2.1000 28 1 -0.1375 -7.0494 2.1073 29 1 0.4196 -4.1353 2.5240 30 1 -1.8875 -8.4552 -1.5714 31 1 -1.3292 -10.0914 -1.1355 32 1 -0.2253 -9.2894 -3.2263 33 1 0.9630 -9.5135 -1.9162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:01 Heat of formation + Delta-G solvation = -126.166480 kcal Electronic energy + Delta-G solvation = -17940.188156 eV Core-core repulsion = 14930.455402 eV Total energy + Delta-G solvation = -3009.732755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26208 -40.09432 -38.24339 -36.97650 -35.75510 -33.76802 -31.35169 -31.00233 -29.05583 -26.82796 -25.29469 -23.96984 -22.91409 -21.40682 -19.74621 -19.05843 -18.49426 -18.24460 -17.52046 -16.49166 -16.24059 -16.13285 -15.70284 -15.67680 -15.34823 -14.94682 -14.46316 -14.41787 -14.13417 -13.49640 -13.32697 -13.12563 -12.78956 -12.52190 -12.10608 -11.97322 -11.80169 -11.67887 -11.42235 -11.33447 -11.09301 -10.52013 -9.59789 -8.88858 -8.17160 -6.28154 0.15740 0.21393 1.42782 1.45372 1.53212 1.98103 2.23566 2.43260 2.54477 3.15923 3.28701 3.44334 3.66698 3.95752 3.99688 4.09579 4.17328 4.37224 4.53096 4.54822 4.61766 4.85191 4.88128 4.97841 5.03803 5.14098 5.40827 5.45464 5.55076 5.79257 5.85310 5.88753 6.26216 6.36782 6.80539 6.87070 7.40732 8.93819 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.038475 B = 0.004843 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.567830 B = 5780.432436 C = 6096.738331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.041 3.959 10 C -0.057 4.057 11 C -0.100 4.100 12 C -0.110 4.110 13 C 0.040 3.960 14 C 0.052 3.948 15 C -0.142 4.142 16 C 0.105 3.895 17 O -0.498 6.498 18 O -0.318 6.318 19 C 0.014 3.986 20 C 0.013 3.987 21 O -0.323 6.323 22 H 0.263 0.737 23 H -0.012 1.012 24 H 0.000 1.000 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.139 0.861 28 H 0.154 0.846 29 H 0.403 0.597 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -18.724 -2.456 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.095 4.095 11 C -0.100 4.100 12 C -0.129 4.129 13 C -0.005 4.005 14 C 0.007 3.993 15 C -0.161 4.161 16 C 0.060 3.940 17 O -0.311 6.311 18 O -0.233 6.233 19 C -0.061 4.061 20 C -0.062 4.062 21 O -0.238 6.238 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.019 0.981 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.171 0.829 29 H 0.261 0.739 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.498 -19.002 -2.436 19.216 hybrid contribution -0.309 1.234 -0.109 1.276 sum -1.807 -17.769 -2.545 18.041 Atomic orbital electron populations 1.70086 1.07698 1.27778 1.51618 1.25911 0.95715 1.03101 0.94683 0.85538 0.78310 0.78281 0.79150 1.19325 1.20866 1.19193 1.21643 0.93568 0.92210 1.50651 0.92201 1.18856 0.93903 0.91872 0.95012 1.20420 0.97416 0.89962 1.01687 1.20319 1.00361 0.97204 0.92162 1.20310 1.00235 0.93772 0.98563 1.18817 1.00982 0.95133 0.85606 1.18561 0.98214 0.89223 0.93325 1.20685 1.02528 0.95047 0.97850 1.17938 0.98402 0.92153 0.85498 1.84703 1.52173 1.56879 1.37296 1.86257 1.69832 1.33565 1.33631 1.24010 0.96286 1.03772 0.82029 1.24011 0.98439 0.79614 1.04129 1.86311 1.85708 1.25295 1.26468 0.92797 0.99402 0.98126 0.91644 0.91811 0.84283 0.82874 0.73860 0.90424 0.82234 0.82630 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.70 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.15 4.95 29.85 0.15 2.30 16 10 C -0.06 -2.50 4.94 29.85 0.15 -2.35 16 11 C -0.10 -3.87 5.15 -19.77 -0.10 -3.97 16 12 C -0.11 -3.94 9.58 22.36 0.21 -3.73 16 13 C 0.04 1.28 6.49 22.55 0.15 1.43 16 14 C 0.05 1.60 6.49 22.55 0.15 1.75 16 15 C -0.14 -4.53 9.90 22.47 0.22 -4.31 16 16 C 0.11 3.80 6.67 22.47 0.15 3.95 16 17 O -0.50 -17.58 12.65 -93.29 -1.18 -18.76 16 18 O -0.32 -8.09 10.42 -82.64 -0.86 -8.95 16 19 C 0.01 0.22 7.26 72.14 0.52 0.74 16 20 C 0.01 0.21 7.26 72.14 0.52 0.73 16 21 O -0.32 -8.88 10.42 -83.75 -0.87 -9.75 16 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 23 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H 0.00 0.02 7.62 -2.39 -0.02 0.00 16 25 H 0.06 2.85 7.85 -2.39 -0.02 2.83 16 26 H 0.06 2.66 8.01 -2.39 -0.02 2.64 16 27 H 0.14 4.76 8.04 -2.91 -0.02 4.73 16 28 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.40 12.23 8.62 -74.06 -0.64 11.59 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.04 285.84 2.70 -67.33 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.49 Total: 13.43 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 2.82 Total: -33.50 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -2.91 Total: -37.46 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.04 2.70 -67.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.833 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds