Wall clock time and date at job start Mon Mar 30 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 103.00466 * 2 1 4 4 C 1.38999 * 120.07551 * 0.25233 * 3 2 1 5 5 C 1.38063 * 119.91584 * 180.27231 * 4 3 2 6 6 C 1.50703 * 119.95986 * 179.75096 * 5 4 3 7 7 C 1.38327 * 120.07955 * 359.47453 * 5 4 3 8 8 C 1.50704 * 119.91824 * 180.23065 * 7 5 4 9 9 C 1.38274 * 120.16219 * 0.25411 * 7 5 4 10 10 C 1.38102 * 120.08207 * 0.02562 * 9 7 5 11 11 C 1.50697 * 120.04447 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47257 * 265.00313 * 11 10 9 13 13 C 1.50692 * 109.47170 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99435 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47424 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47131 * 120.00268 * 17 15 13 20 20 H 1.48502 * 109.46913 * 240.00153 * 17 15 13 21 21 H 1.09001 * 109.47510 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46717 * 300.00358 * 1 2 3 23 23 H 1.09006 * 109.46680 * 59.99775 * 1 2 3 24 24 H 1.07992 * 120.04613 * 0.02998 * 4 3 2 25 25 H 1.09002 * 109.47152 * 269.72395 * 6 5 4 26 26 H 1.09001 * 109.46980 * 149.72495 * 6 5 4 27 27 H 1.09004 * 109.47113 * 29.72476 * 6 5 4 28 28 H 1.09007 * 109.46945 * 90.00219 * 8 7 5 29 29 H 1.08992 * 109.46905 * 209.99798 * 8 7 5 30 30 H 1.09001 * 109.47283 * 330.00640 * 8 7 5 31 31 H 1.07998 * 119.96088 * 179.97438 * 9 7 5 32 32 H 1.09004 * 109.47142 * 25.00049 * 11 10 9 33 33 H 1.09002 * 109.47275 * 145.00316 * 11 10 9 34 34 H 1.08998 * 109.47217 * 299.99733 * 12 11 10 35 35 H 1.09002 * 109.46975 * 59.99820 * 12 11 10 36 36 H 0.96998 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1952 2.6661 0.0053 5 6 1.5096 4.0105 -0.0004 6 6 0.4097 5.0407 -0.0003 7 6 2.8331 4.4130 -0.0004 8 6 3.1721 5.8814 -0.0014 9 6 3.8456 3.4714 0.0000 10 6 3.5388 2.1249 -0.0001 11 6 4.6430 1.0994 -0.0003 12 6 4.9312 0.6604 -1.4374 13 6 6.0358 -0.3646 -1.4375 14 1 6.4869 -0.6726 -0.5057 15 6 6.4706 -0.9095 -2.6272 16 7 5.9216 -0.5341 -3.7618 17 14 7.8394 -2.1806 -2.6273 18 1 8.2851 -2.4283 -1.2325 19 1 7.3389 -3.4469 -3.2199 20 1 8.9828 -1.6765 -3.4296 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.1618 2.3527 0.0099 25 1 0.1445 5.2891 -1.0280 26 1 0.7529 5.9386 0.5135 27 1 -0.4639 4.6394 0.5135 28 1 3.2537 6.2362 1.0261 29 1 4.1211 6.0348 -0.5151 30 1 2.3867 6.4353 -0.5157 31 1 4.8778 3.7893 -0.0004 32 1 5.5430 1.5345 0.4341 33 1 4.3364 0.2352 0.5891 34 1 4.0312 0.2252 -1.8718 35 1 5.2378 1.5246 -2.0267 36 1 6.2277 -0.9171 -4.5987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:09 Heat of formation + Delta-G solvation = -6.478202 kcal Electronic energy + Delta-G solvation = -15809.405524 eV Core-core repulsion = 13383.448808 eV Total energy + Delta-G solvation = -2425.956716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.31723 -34.77357 -32.78704 -32.17476 -30.28658 -28.88069 -27.23203 -26.41874 -24.14243 -21.88328 -21.28476 -19.57217 -16.61656 -16.19506 -15.80721 -15.00022 -14.43650 -14.15750 -14.11531 -13.53939 -13.50875 -13.04123 -12.76436 -12.68647 -12.29879 -12.15307 -12.09879 -11.95062 -11.75035 -11.18589 -10.94315 -10.87760 -10.66523 -10.47441 -9.88592 -9.65073 -9.48481 -9.05314 -8.96181 -8.27059 -8.12872 -6.85829 -5.92224 -3.94252 1.56401 1.72884 1.93074 2.83571 3.35727 3.42902 3.47350 3.97168 4.52335 4.97002 5.04957 5.18547 5.19904 5.24645 5.34958 5.43564 5.43863 5.60751 5.70276 5.71771 5.75289 5.86069 5.91465 5.98941 6.19533 6.34369 6.41843 6.62756 6.72437 6.87809 7.03100 7.08293 7.34401 7.77398 7.92962 8.09203 8.48936 9.12461 9.68753 11.18982 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.006105 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.706982 B = 4584.976665 C = 5420.583742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.081 6.081 3 C -0.090 4.090 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.109 4.109 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.102 4.102 10 C -0.039 4.039 11 C -0.082 4.082 12 C 0.031 3.969 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.014 0.986 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 9.176 8.313 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.162 5.838 3 C -0.203 4.203 4 C -0.155 4.155 5 C -0.092 4.092 6 C -0.166 4.166 7 C -0.096 4.096 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.044 4.044 11 C -0.119 4.119 12 C -0.006 4.006 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.121 0.879 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.135 0.865 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.799 8.055 8.129 15.735 hybrid contribution -0.112 0.355 -0.219 0.432 sum -10.911 8.410 7.909 15.885 Atomic orbital electron populations 1.23727 0.97998 1.06428 1.04817 1.86112 1.02748 1.02861 1.92039 1.21627 0.96123 0.96512 1.06016 1.20879 0.97638 0.92462 1.04491 1.19458 0.94028 0.93636 1.02114 1.20747 0.96381 0.97517 1.01927 1.19693 0.92586 0.95633 1.01675 1.20768 1.02018 0.92175 1.01775 1.20882 0.98882 0.91736 1.00709 1.20013 0.93064 0.95132 0.96225 1.20881 0.93700 0.95058 1.02301 1.19061 0.97105 0.96082 0.88384 1.21265 1.18598 1.22903 0.92709 0.92662 1.24998 0.96808 0.96866 0.95669 1.69991 1.42230 1.43556 0.97586 0.86572 0.82089 0.81532 0.78035 1.19734 1.21037 1.21112 0.87902 0.90549 0.90241 0.86506 0.91538 0.91545 0.92148 0.91633 0.91600 0.91727 0.85746 0.92114 0.91645 0.95413 0.96761 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.15 101.05 0.92 -1.06 16 2 S -0.08 -1.43 20.47 -107.50 -2.20 -3.63 16 3 C -0.09 -1.65 6.11 -39.03 -0.24 -1.89 16 4 C -0.13 -2.05 9.01 -39.36 -0.35 -2.41 16 5 C -0.09 -1.32 5.88 -104.65 -0.62 -1.93 16 6 C -0.11 -1.16 9.19 36.01 0.33 -0.83 16 7 C -0.09 -1.41 5.88 -104.57 -0.62 -2.02 16 8 C -0.11 -1.26 9.19 36.01 0.33 -0.93 16 9 C -0.10 -1.79 9.33 -39.62 -0.37 -2.16 16 10 C -0.04 -0.77 5.15 -104.41 -0.54 -1.31 16 11 C -0.08 -1.80 4.75 -27.88 -0.13 -1.94 16 12 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 21 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 22 H 0.08 0.82 7.74 -51.92 -0.40 0.42 16 23 H 0.08 0.93 7.76 -51.92 -0.40 0.53 16 24 H 0.12 1.55 5.88 -52.49 -0.31 1.24 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.61 6.69 -51.93 -0.35 0.27 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.06 0.64 6.69 -51.93 -0.35 0.30 16 31 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.07 1.45 7.01 -51.93 -0.36 1.08 16 34 H 0.03 0.79 7.73 -51.93 -0.40 0.39 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.80 308.19 -9.15 -40.96 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.49 Total: -2.78 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -1.83 Total: -29.47 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.20 Total: -3.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.80 -9.15 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.479 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds